NP-MRD: Showing NP-Card for 1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone (NP0282556)

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Record Information

Version

2.0

Created at

2022-09-09 09:26:08 UTC

Updated at

2022-09-09 09:26:08 UTC

NP-MRD ID

NP0282556

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone

Description

1-{2-[7,8-Dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethan-1-one belongs to the class of organic compounds known as n-acylpyrrolidines. These are n-Acylated Pyrrolidine derivatives. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. 1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone is found in Broussonetia papyrifera. 1-{2-[7,8-Dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethan-1-one is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171514572D          

 28 29  0  0  0  0            999 V2000
    1.1168   -6.6446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5037   -6.0925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2809   -6.3475    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6753   -5.2856    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1232   -4.6725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6972   -4.7587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1822   -4.0913    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5357   -3.9580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2002   -3.2043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3427   -4.1295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9558   -3.5775    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -6.1875    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
M  END

     RDKit          3D

 66 67  0  0  0  0  0  0  0  0999 V2000
    5.3714    2.1887    1.9195 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7438    1.5863    0.7459 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8889    2.3466    0.1441 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9549    0.3025    0.2061 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.8376   -0.7850    0.5253 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6772   -0.7316    1.7285 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5800    0.3221    1.7098 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8296   -1.9519    0.5654 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9417   -1.6638    1.5638 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2619   -1.7368   -0.8455 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2125   -2.2711   -1.7160 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1902   -0.2361   -0.9428 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8229    0.2897   -1.1011 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8378    0.0863   -0.0235 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5151    0.7465   -0.3992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0938    0.2087   -1.6539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3921    0.8778   -1.9705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4752    0.7826   -0.9444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8755   -0.5981   -0.6828 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7485   -1.3229   -0.2061 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9321   -0.8570    0.3669 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0314   -2.3042    0.3125 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3011   -0.3203    0.0574 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2978    1.1720    0.2007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4316    1.6312    1.1337 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6780    0.9441    0.5579 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5364   -0.5008    0.9577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1893   -0.9530    1.0077 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3553    2.6690    1.7402 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4581    1.5303    2.8006 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6951    3.0511    2.2702 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4727   -1.0117   -0.4097 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3359   -1.6723    1.7980 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1046   -0.6884    2.6817 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8272    0.5291    0.7721 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3481   -2.9110    0.6568 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0315   -0.7607    1.9601 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3297   -2.2592   -1.0132 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7536   -2.5257   -2.5425 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7862    0.0680   -1.8284 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3867   -0.2516   -2.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8558    1.3233   -1.4727 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6666   -0.9897    0.2366 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1303    0.5369    0.9349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1883    0.8164    0.4230 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8143    1.8121   -0.6440 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5665    0.4430   -2.5481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1976   -0.8753   -1.6820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1409    1.9548   -2.1997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7703    0.4915   -2.9556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2978    1.4334   -1.3548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1273    1.2703    0.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2092   -1.1115   -1.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0173   -2.1931    0.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6157   -0.6334    1.3825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2829   -2.5838    1.2039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5920   -0.6072   -0.9564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3850    1.5852    0.6598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5122    1.6490   -0.7562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2564    1.1891    2.1243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5160    2.7167    1.1187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5530    1.3785    1.0528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6409    1.0926   -0.5310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1249   -1.1104    0.2486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9956   -0.6179    1.9566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1776   -1.9901    0.7705 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  5  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 12  4  1  0
 28 23  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  5 32  1  6
  6 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  6
  9 37  1  0
 10 38  1  1
 11 39  1  0
 12 40  1  6
 13 41  1  0
 13 42  1  0
 14 43  1  0
 14 44  1  0
 15 45  1  0
 15 46  1  0
 16 47  1  0
 16 48  1  0
 17 49  1  0
 17 50  1  0
 18 51  1  0
 18 52  1  0
 19 53  1  6
 20 54  1  0
 21 55  1  1
 22 56  1  0
 23 57  1  6
 24 58  1  0
 24 59  1  0
 25 60  1  0
 25 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  0
 27 65  1  0
 28 66  1  0
M  END


  Mrv1533004171514572D          

 28 29  0  0  0  0            999 V2000
    1.1168   -6.6446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5037   -6.0925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2809   -6.3475    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6753   -5.2856    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1232   -4.6725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6972   -4.7587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1822   -4.0913    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5357   -3.9580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2002   -3.2043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3427   -4.1295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9558   -3.5775    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -6.1875    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0282556

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)N1C(CO)C(O)C(O)C1CCCCCCC(O)C(O)C1CCCCN1

> <INCHI_IDENTIFIER>
InChI=1S/C20H38N2O6/c1-13(24)22-15(19(27)20(28)16(22)12-23)9-4-2-3-5-10-17(25)18(26)14-8-6-7-11-21-14/h14-21,23,25-28H,2-12H2,1H3

> <INCHI_KEY>
QDFQIFQCFMZYDE-UHFFFAOYSA-N

> <FORMULA>
C20H38N2O6

> <MOLECULAR_WEIGHT>
402.532

> <EXACT_MASS>
402.272986952

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
45.50051255114477

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethan-1-one

> <ALOGPS_LOGP>
0.06

> <JCHEM_LOGP>
-0.9450419233333329

> <ALOGPS_LOGS>
-1.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.636632584851817

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.025913173779799

> <JCHEM_PKA_STRONGEST_BASIC>
9.489191882650585

> <JCHEM_POLAR_SURFACE_AREA>
133.49

> <JCHEM_REFRACTIVITY>
104.22359999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.28e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       2.085 -12.403   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.940 -11.373   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -0.524 -11.849   0.000  0.00  0.00           O+0
HETATM    4  N   UNK     0       1.260  -9.866   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       0.230  -8.722   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.302  -8.883   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.207  -7.637   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.000  -7.388   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       0.374  -5.981   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.506  -7.708   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.651  -6.678   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.001 -10.010   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668 -10.010   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.336 -10.010   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      12.003 -11.550   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      13.337  -7.700   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      14.670 -10.010   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      16.004  -9.240   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      17.338 -10.010   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      17.338 -11.550   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      16.004 -12.320   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0      14.670 -11.550   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   12                                                  
CONECT    5    4    6    8                                                  
CONECT    6    5    7                                                       
CONECT    7    6                                                            
CONECT    8    5    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    4   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   28                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   23                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₈N₂O₆

Average Mass

402.5320 Da

Monoisotopic Mass

402.27299 Da

IUPAC Name

1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethan-1-one

Traditional Name

1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone

CAS Registry Number

Not Available

SMILES

CC(=O)N1C(CO)C(O)C(O)C1CCCCCCC(O)C(O)C1CCCCN1

InChI Identifier

InChI=1S/C20H38N2O6/c1-13(24)22-15(19(27)20(28)16(22)12-23)9-4-2-3-5-10-17(25)18(26)14-8-6-7-11-21-14/h14-21,23,25-28H,2-12H2,1H3

InChI Key

QDFQIFQCFMZYDE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Broussonetia papyrifera	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acylpyrrolidines. These are n-Acylated Pyrrolidine derivatives. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrrolidines

Sub Class

N-acylpyrrolidines

Direct Parent

N-acylpyrrolidines

Alternative Parents

Substituents

N-acylpyrrolidine
Piperidine
1,3-aminoalcohol
Acetamide
Tertiary carboxylic acid amide
1,2-aminoalcohol
Amino acid or derivatives
Carboxamide group
Secondary alcohol
Carboxylic acid derivative
Azacycle
Secondary amine
Secondary aliphatic amine
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Primary alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organopnictogen compound
Amine
Alcohol
Organic oxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.06	ALOGPS
logP	-0.95	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	13.03	ChemAxon
pKa (Strongest Basic)	9.49	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	133.49 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	104.22 m³·mol⁻¹	ChemAxon
Polarizability	45.5 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73076207

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone (NP0282556)

MOL for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

3D MOL for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

3D SDF for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

3D-SDF for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

PDB for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

3D PDB for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

SMILES for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

INCHI for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

Structure for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)

3D Structure for NP0282556 (1-{2-[7,8-dihydroxy-8-(piperidin-2-yl)octyl]-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-1-yl}ethanone)