NP-MRD: Showing NP-Card for 8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one (NP0281899)

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Record Information

Version

2.0

Created at

2022-09-09 08:30:51 UTC

Updated at

2022-09-09 08:30:52 UTC

NP-MRD ID

NP0281899

Secondary Accession Numbers

None

Natural Product Identification

Common Name

8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one

Description

3,4-Dihydro-8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-1H-2-benzopyran-1-one belongs to the class of organic compounds known as methoxyphenols. Methoxyphenols are compounds containing a methoxy group attached to the benzene ring of a phenol moiety. 8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one is found in Hydrangea macrophylla. 3,4-Dihydro-8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-1H-2-benzopyran-1-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 35 37  0  0  0  0  0  0  0  0999 V2000
   -6.0664   -0.3328    0.4366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1488    0.7029    0.7528 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7861    0.4731    0.6267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3083   -0.7467    0.1986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9545   -0.9784    0.0722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0393    0.0164    0.3747 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3975   -0.2799    0.2228 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9952    0.3305   -1.0090 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4607    0.1116   -1.0200 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1087    0.0339   -2.2754 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4645   -0.1442   -2.3133 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1778   -0.2449   -1.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5629   -0.1719    0.1116 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2912   -0.2742    1.2304 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1783    0.0093    0.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4754    0.0681    1.4285 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0758   -0.0165    2.4979 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0617    0.2279    1.3911 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5345    1.2173    0.7970 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8823    1.4665    0.9292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3088    2.7296    1.3700 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9164   -1.2056    1.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1048    0.0473    0.5414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9345   -0.6516   -0.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0353   -1.5243   -0.0374 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5825   -1.9432   -0.2662 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5453   -1.3772    0.1824 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5115   -0.1352   -1.8936 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8572    1.4418   -1.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4941    0.1200   -3.1681 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9470   -0.2018   -3.3013 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2467   -0.3849   -1.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2096   -0.2688    2.1800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8117    1.9941    1.0330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6472    3.4602    1.5926 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 20  2  0
 20 21  1  0
 20 19  1  0
 19  6  2  0
  6  5  1  0
  5  4  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 15  2  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 15 13  1  0
 13 14  1  0
 13 12  2  0
 12 11  1  0
 11 10  2  0
  4  3  1  0
 18  7  1  0
 10  9  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
 21 35  1  0
 19 34  1  0
  5 26  1  0
  4 25  1  0
  7 27  1  6
  8 28  1  0
  8 29  1  0
 14 33  1  0
 12 32  1  0
 11 31  1  0
 10 30  1  0
M  END


  Mrv0541 05061305312D          

 21 23  0  0  0  0            999 V2000
    6.4302    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  2  0  0  0  0
  4  2  1  0  0  0  0
  6  5  2  0  0  0  0
  9  5  1  0  0  0  0
  9  7  2  0  0  0  0
 10  3  1  0  0  0  0
 10  8  1  0  0  0  0
 11  4  2  0  0  0  0
 12  7  1  0  0  0  0
 13  6  1  0  0  0  0
 13 12  2  0  0  0  0
 14  8  1  0  0  0  0
 14  9  1  0  0  0  0
 15 10  2  0  0  0  0
 15 11  1  0  0  0  0
 16 15  1  0  0  0  0
 17 11  1  0  0  0  0
 18 12  1  0  0  0  0
 19 16  2  0  0  0  0
 20  1  1  0  0  0  0
 20 13  1  0  0  0  0
 21 14  1  0  0  0  0
 21 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0281899

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(O)C=C(C=C1)C1CC2=C(C(=O)O1)C(O)=CC=C2

> <INCHI_IDENTIFIER>
InChI=1S/C16H14O5/c1-20-13-6-5-9(7-12(13)18)14-8-10-3-2-4-11(17)15(10)16(19)21-14/h2-7,14,17-18H,8H2,1H3

> <INCHI_KEY>
PBILBHLAPJTJOT-UHFFFAOYSA-N

> <FORMULA>
C16H14O5

> <MOLECULAR_WEIGHT>
286.2794

> <EXACT_MASS>
286.084123558

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
29.187364644524706

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-1H-2-benzopyran-1-one

> <ALOGPS_LOGP>
2.63

> <JCHEM_LOGP>
3.486049564666666

> <ALOGPS_LOGS>
-3.63

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.027654687161956

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.413291405948051

> <JCHEM_PKA_STRONGEST_BASIC>
-4.295553684032247

> <JCHEM_POLAR_SURFACE_AREA>
75.99000000000001

> <JCHEM_REFRACTIVITY>
76.1007

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.71e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
phyllodulcin

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      12.003   3.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.669   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.669   1.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       9.336   3.850   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      12.003   2.310   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       6.668  -2.310   0.000  0.00  0.00           O+0
CONECT    1   20                                                            
CONECT    2    3    4                                                       
CONECT    3    2   10                                                       
CONECT    4    2   11                                                       
CONECT    5    6    9                                                       
CONECT    6    5   13                                                       
CONECT    7    9   12                                                       
CONECT    8   10   14                                                       
CONECT    9    5    7   14                                                  
CONECT   10    3    8   15                                                  
CONECT   11    4   15   17                                                  
CONECT   12    7   13   18                                                  
CONECT   13    6   12   20                                                  
CONECT   14    8    9   21                                                  
CONECT   15   10   11   16                                                  
CONECT   16   15   19   21                                                  
CONECT   17   11                                                            
CONECT   18   12                                                            
CONECT   19   16                                                            
CONECT   20    1   13                                                       
CONECT   21   14   16                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Value	Source
3,4-dihydro-3-(3-Hydroxy-4-methoxyphenyl)-8-hydroxyisocoumarin	HMDB
Phyllodulcin	HMDB
Phyllodulcinol	HMDB
Phyllodulcin, (R)-isomer	MeSH

Chemical Formula

C₁₆H₁₄O₅

Average Mass

286.2794 Da

Monoisotopic Mass

286.08412 Da

IUPAC Name

8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-1H-2-benzopyran-1-one

Traditional Name

phyllodulcin

CAS Registry Number

Not Available

SMILES

COC1=C(O)C=C(C=C1)C1CC2=C(C(=O)O1)C(O)=CC=C2

InChI Identifier

InChI=1S/C16H14O5/c1-20-13-6-5-9(7-12(13)18)14-8-10-3-2-4-11(17)15(10)16(19)21-14/h2-7,14,17-18H,8H2,1H3

InChI Key

PBILBHLAPJTJOT-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hydrangea macrophylla	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as methoxyphenols. Methoxyphenols are compounds containing a methoxy group attached to the benzene ring of a phenol moiety.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

Benzopyran
Isochromane
2-benzopyran
Methoxyphenol
Phenoxy compound
Anisole
Methoxybenzene
Phenol ether
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Monocyclic benzene moiety
Vinylogous acid
Carboxylic acid ester
Lactone
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Ether
Monocarboxylic acid or derivatives
Organic oxide
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.63	ALOGPS
logP	3.49	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	9.41	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	75.99 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	76.1 m³·mol⁻¹	ChemAxon
Polarizability	29.19 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0030807

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB002757

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

164615

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one (NP0281899)

MOL for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

3D MOL for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

3D SDF for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

3D-SDF for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

PDB for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

3D PDB for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

SMILES for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

INCHI for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

Structure for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)

3D Structure for NP0281899 (8-hydroxy-3-(3-hydroxy-4-methoxyphenyl)-3,4-dihydro-2-benzopyran-1-one)