NP-MRD: Showing NP-Card for (1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate (NP0281459)

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Record Information

Version

2.0

Created at

2022-09-09 07:48:54 UTC

Updated at

2022-09-09 07:48:54 UTC

NP-MRD ID

NP0281459

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate

Description

(1R,2R,3R,4S,5S,7R,9S,10R,11R,13S)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]Pentadecan-11-yl (2E)-3-phenylprop-2-enoate belongs to the class of organic compounds known as cinnamic acid esters. These are compound containing an ester derivative of cinnamic acid. (1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate is found in Euphorbia micractina. Based on a literature review very few articles have been published on (1R,2R,3R,4S,5S,7R,9S,10R,11R,13S)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]Pentadecan-11-yl (2E)-3-phenylprop-2-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092209482D          

 35 39  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309092209482D          

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  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 18  4  1  1  0  0  0
 18 19  1  0  0  0  0
  2 19  1  0  0  0  0
 19 20  1  1  0  0  0
 11 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 21 24  1  0  0  0  0
 10 24  1  0  0  0  0
 24 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 30 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0281459

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1C[C@@]2(O)[C@H]([C@H]1O)[C@@H](O)[C@]1(C)CC[C@H]3[C@@H]([C@@H](OC(=O)\C=C\C4=CC=CC=C4)C3(C)C)[C@]1(C)C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C29H38O6/c1-16-15-29(34)21(22(16)31)23(32)27(4)14-13-18-20(28(27,5)25(29)33)24(26(18,2)3)35-19(30)12-11-17-9-7-6-8-10-17/h6-12,16,18,20-24,31-32,34H,13-15H2,1-5H3/b12-11+/t16-,18-,20-,21+,22-,23+,24+,27-,28+,29+/m0/s1

> <INCHI_KEY>
AJMBKJHYKRJOBP-AWZHKKSRSA-N

> <FORMULA>
C29H38O6

> <MOLECULAR_WEIGHT>
482.617

> <EXACT_MASS>
482.266838944

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
53.50974255811594

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R,3R,4S,5S,7R,9S,10R,11R,13S)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0^{3,7}.0^{10,13}]pentadecan-11-yl (2E)-3-phenylprop-2-enoate

> <JCHEM_LOGP>
4.213632770333332

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.18793717365702

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.64271262338768

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0137787706760815

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
131.66719999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,3R,4S,5S,7R,9S,10R,11R,13S)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0^{3,7}.0^{10,13}]pentadecan-11-yl (2E)-3-phenylprop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       1.133  -2.799   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.609  -3.239   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.832  -2.303   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.100  -3.178   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       5.383  -1.664   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       6.598  -2.821   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       7.038  -1.345   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       7.656  -3.939   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.096  -2.464   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.154  -3.582   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.212  -4.701   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.772  -6.177   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.274  -6.534   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.216  -5.415   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.776  -6.891   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.718  -5.772   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.278  -7.248   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.660  -4.653   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.120  -4.691   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.246  -5.959   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      11.331  -3.643   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      12.450  -2.585   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.389  -4.762   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.273  -2.524   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      10.316  -0.985   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      11.670  -0.252   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      11.713   1.287   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      12.982  -1.059   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      14.337  -0.327   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      15.648  -1.134   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      17.003  -0.401   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      18.315  -1.208   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      18.272  -2.747   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      16.917  -3.480   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      15.605  -2.673   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6   18                                             
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10   14                                             
CONECT    9    8                                                            
CONECT   10    8   11   24                                                  
CONECT   11   10   12   21                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    8   15   16                                             
CONECT   15   14                                                            
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16    4   19                                                  
CONECT   19   18    2   20                                                  
CONECT   20   19                                                            
CONECT   21   11   22   23   24                                             
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   21   10   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   35                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   30                                                       
MASTER        0    0    0    0    0    0    0    0   35    0   78    0
END

View in JSmol

Synonyms

Value	Source
(1R,2R,3R,4S,5S,7R,9S,10R,11R,13S)-2,4,7-Trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0,.0,]pentadecan-11-yl (2E)-3-phenylprop-2-enoic acid	Generator

Chemical Formula

C₂₉H₃₈O₆

Average Mass

482.6170 Da

Monoisotopic Mass

482.26684 Da

IUPAC Name

(1R,2R,3R,4S,5S,7R,9S,10R,11R,13S)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0^{3,7}.0^{10,13}]pentadecan-11-yl (2E)-3-phenylprop-2-enoate

Traditional Name

(1R,2R,3R,4S,5S,7R,9S,10R,11R,13S)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0^{3,7}.0^{10,13}]pentadecan-11-yl (2E)-3-phenylprop-2-enoate

CAS Registry Number

Not Available

SMILES

C[C@H]1C[C@@]2(O)[C@H]([C@H]1O)[C@@H](O)[C@]1(C)CC[C@H]3[C@@H]([C@@H](OC(=O)\C=C\C4=CC=CC=C4)C3(C)C)[C@]1(C)C2=O

InChI Identifier

InChI=1S/C29H38O6/c1-16-15-29(34)21(22(16)31)23(32)27(4)14-13-18-20(28(27,5)25(29)33)24(26(18,2)3)35-19(30)12-11-17-9-7-6-8-10-17/h6-12,16,18,20-24,31-32,34H,13-15H2,1-5H3/b12-11+/t16-,18-,20-,21+,22-,23+,24+,27-,28+,29+/m0/s1

InChI Key

AJMBKJHYKRJOBP-AWZHKKSRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Euphorbia micractina	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cinnamic acid esters. These are compound containing an ester derivative of cinnamic acid.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Cinnamic acid esters

Direct Parent

Cinnamic acid esters

Alternative Parents

Substituents

Cinnamic acid ester
Styrene
Fatty acid ester
Monocyclic benzene moiety
Fatty acyl
Benzenoid
Cyclic alcohol
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tertiary alcohol
Carboxylic acid ester
Ketone
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Polyol
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organooxygen compound
Organic oxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.21	ChemAxon
pKa (Strongest Acidic)	12.64	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	131.67 m³·mol⁻¹	ChemAxon
Polarizability	53.51 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163188803

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate (NP0281459)

MOL for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

3D MOL for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

3D SDF for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

3D-SDF for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

PDB for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

3D PDB for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

SMILES for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

INCHI for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

Structure for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)

3D Structure for NP0281459 ((1r,2r,3r,4s,5s,7r,9s,10r,11r,13s)-2,4,7-trihydroxy-1,5,9,12,12-pentamethyl-8-oxotetracyclo[7.6.0.0³,⁷.0¹⁰,¹³]pentadecan-11-yl (2e)-3-phenylprop-2-enoate)