NP-MRD: Showing NP-Card for methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate (NP0281423)

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Record Information

Version

2.0

Created at

2022-09-09 07:45:33 UTC

Updated at

2022-09-09 07:45:33 UTC

NP-MRD ID

NP0281423

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate

Description

Methyl (5Z)-7-[(2S,4aR,5R,7aR)-6-oxo-2-pentyl-octahydrocyclopenta[b]pyran-5-yl]hept-5-enoate belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate is found in Plexaura homomalla. Based on a literature review very few articles have been published on methyl (5Z)-7-[(2S,4aR,5R,7aR)-6-oxo-2-pentyl-octahydrocyclopenta[b]pyran-5-yl]hept-5-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092209452D          

 25 26  0  0  1  0            999 V2000
    2.1476   11.4784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5956   10.8653    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8505   10.0807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2985    9.4676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5534    8.6830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0014    8.0699    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2563    7.2852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7043    6.6722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1027    6.8437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3576    7.6283    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1826    7.6283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4375    6.8437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2222    6.5887    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7701    6.3588    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7701    5.5338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4846    5.1213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4846    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7701    3.8838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0556    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6588    3.8838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3733    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3733    5.1213    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0878    3.8838    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8023    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1944    8.2414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 10 25  1  0  0  0  0
  6 25  1  0  0  0  0
M  END

     RDKit          3D

 59 60  0  0  0  0  0  0  0  0999 V2000
   -7.0317   -0.0227   -0.6944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1136    0.0847    0.7814 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8506    0.1280    1.5639 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9311    1.2632    1.3176 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3031    1.3023   -0.0147 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4058    0.0870   -0.2771 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8468    0.2274   -1.6418 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5603   -0.5278   -1.8684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6560   -0.2602   -0.7132 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4176   -0.7477    0.5288 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3322   -0.6182    1.5633 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212   -1.2327    0.8037 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7641   -1.7336    1.3734 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5729   -1.1032   -0.6502 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7356   -0.5056   -1.4163 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1523    0.8141   -0.9427 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3588    1.0731   -0.4951 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4809    0.1180   -0.3879 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8672    0.0936    1.0908 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9873   -0.8341    1.4042 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2506   -0.5064    0.7168 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2236   -1.3169    0.8776 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4873    0.5811   -0.0767 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.7242    0.8451   -0.7112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4456    0.1429    0.7335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1255   -0.4993   -1.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9418   -0.6426   -1.0118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2020    0.9950   -1.1477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7054   -0.7979    1.1968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7872    0.9573    1.0855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3056   -0.8734    1.4263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0663    0.0977    2.6789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5041    2.2448    1.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1358    1.3425    2.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0038    1.5238   -0.8018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6157    2.2337   -0.0064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0329   -0.8079   -0.2035 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6252    1.3039   -1.8370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5875   -0.1168   -2.3933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7546   -1.6230   -1.9157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1387   -0.1432   -2.8294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4519    0.8279   -0.6439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7124   -1.7783    0.3499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1465    0.4272    1.8134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6221   -1.2492    2.4297 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3287   -2.0927   -1.1148 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3360   -0.4148   -2.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5320   -1.2630   -1.5166 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4399    1.6337   -0.9554 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5950    2.1001   -0.1553 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3756    0.5114   -0.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2625   -0.9146   -0.6466 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9844   -0.1871    1.6909 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1728    1.1185    1.4089 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1728   -0.7443    2.5100 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7202   -1.9046    1.2629 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2888   -0.1082   -0.7786 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4691    1.2432   -1.7210 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2555    1.6281   -0.1536 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
 10 25  1  0
 25  6  1  0
 14  9  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  0
  3 32  1  0
  4 33  1  0
  4 34  1  0
  5 35  1  0
  5 36  1  0
  6 37  1  6
  7 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  9 42  1  1
 10 43  1  6
 11 44  1  0
 11 45  1  0
 14 46  1  6
 15 47  1  0
 15 48  1  0
 16 49  1  0
 17 50  1  0
 18 51  1  0
 18 52  1  0
 19 53  1  0
 19 54  1  0
 20 55  1  0
 20 56  1  0
 24 57  1  0
 24 58  1  0
 24 59  1  0
M  END


  Mrv1652309092209452D          

 25 26  0  0  1  0            999 V2000
    2.1476   11.4784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5956   10.8653    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8505   10.0807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2985    9.4676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5534    8.6830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0014    8.0699    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2563    7.2852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7043    6.6722    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1027    6.8437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3576    7.6283    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1826    7.6283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4375    6.8437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2222    6.5887    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7701    6.3588    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7701    5.5338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4846    5.1213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4846    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7701    3.8838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0556    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6588    3.8838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3733    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3733    5.1213    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0878    3.8838    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8023    4.2963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1944    8.2414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 10 25  1  0  0  0  0
  6 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0281423

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC[C@H]1CC[C@H]2[C@@H](CC(=O)[C@@H]2C\C=C/CCCC(=O)OC)O1

> <INCHI_IDENTIFIER>
InChI=1S/C21H34O4/c1-3-4-7-10-16-13-14-18-17(19(22)15-20(18)25-16)11-8-5-6-9-12-21(23)24-2/h5,8,16-18,20H,3-4,6-7,9-15H2,1-2H3/b8-5-/t16-,17+,18+,20+/m0/s1

> <INCHI_KEY>
FCMFHXNVRJAYJM-IRRXTAOVSA-N

> <FORMULA>
C21H34O4

> <MOLECULAR_WEIGHT>
350.499

> <EXACT_MASS>
350.245709575

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
42.400759925135276

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (5Z)-7-[(2S,4aR,5R,7aR)-6-oxo-2-pentyl-octahydrocyclopenta[b]pyran-5-yl]hept-5-enoate

> <JCHEM_LOGP>
4.738881962

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.26218237454887

> <JCHEM_PKA_STRONGEST_BASIC>
-4.1706253348367035

> <JCHEM_POLAR_SURFACE_AREA>
52.60000000000001

> <JCHEM_REFRACTIVITY>
99.73149999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (5Z)-7-[(2S,4aR,5R,7aR)-6-oxo-2-pentyl-hexahydro-2H-cyclopenta[b]pyran-5-yl]hept-5-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       4.009  21.426   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.978  20.282   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.454  18.817   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.424  17.673   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.900  16.208   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.869  15.064   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.345  13.599   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.315  12.455   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.192  12.775   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.668  14.239   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.208  14.239   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.683  12.775   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -4.148  12.299   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -1.438  11.870   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.438  10.330   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.771   9.560   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.771   8.020   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.438   7.250   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.104   8.020   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.230   7.250   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.564   8.020   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.564   9.560   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       3.897   7.250   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.231   8.020   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.363  15.384   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   25                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11   25                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    9   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23                                                            
CONECT   25   10    6                                                       
MASTER        0    0    0    0    0    0    0    0   25    0   52    0
END

View in JSmol

Synonyms

Value	Source
Methyl (5Z)-7-[(2S,4ar,5R,7ar)-6-oxo-2-pentyl-octahydrocyclopenta[b]pyran-5-yl]hept-5-enoic acid	Generator

Chemical Formula

C₂₁H₃₄O₄

Average Mass

350.4990 Da

Monoisotopic Mass

350.24571 Da

IUPAC Name

methyl (5Z)-7-[(2S,4aR,5R,7aR)-6-oxo-2-pentyl-octahydrocyclopenta[b]pyran-5-yl]hept-5-enoate

Traditional Name

methyl (5Z)-7-[(2S,4aR,5R,7aR)-6-oxo-2-pentyl-hexahydro-2H-cyclopenta[b]pyran-5-yl]hept-5-enoate

CAS Registry Number

Not Available

SMILES

CCCCC[C@H]1CC[C@H]2[C@@H](CC(=O)[C@@H]2C\C=C/CCCC(=O)OC)O1

InChI Identifier

InChI=1S/C21H34O4/c1-3-4-7-10-16-13-14-18-17(19(22)15-20(18)25-16)11-8-5-6-9-12-21(23)24-2/h5,8,16-18,20H,3-4,6-7,9-15H2,1-2H3/b8-5-/t16-,17+,18+,20+/m0/s1

InChI Key

FCMFHXNVRJAYJM-IRRXTAOVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Plexaura homomalla	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Fatty acid ester
Fatty acid methyl ester
Oxane
Methyl ester
Carboxylic acid ester
Ketone
Cyclic ketone
Carboxylic acid derivative
Dialkyl ether
Ether
Monocarboxylic acid or derivatives
Oxacycle
Organoheterocyclic compound
Organic oxide
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.74	ChemAxon
pKa (Strongest Acidic)	18.26	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	52.6 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	99.73 m³·mol⁻¹	ChemAxon
Polarizability	42.4 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162880847

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate (NP0281423)

MOL for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

3D MOL for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

3D SDF for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

3D-SDF for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

PDB for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

3D PDB for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

SMILES for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

INCHI for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

Structure for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)

3D Structure for NP0281423 (methyl (5z)-7-[(2s,4ar,5r,7ar)-6-oxo-2-pentyl-hexahydro-2h-cyclopenta[b]pyran-5-yl]hept-5-enoate)