NP-MRD: Showing NP-Card for 7-epiclusianone (NP0280084)

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Record Information

Version

2.0

Created at

2022-09-09 05:42:04 UTC

Updated at

2022-09-09 05:42:04 UTC

NP-MRD ID

NP0280084

Secondary Accession Numbers

None

Natural Product Identification

Common Name

7-epiclusianone

Description

7-Epiclusianone belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other. 7-epiclusianone is found in Hypericum scabrum. 7-epiclusianone was first documented in 1999 (PMID: 10075791). Based on a literature review a small amount of articles have been published on 7-epiclusianone (PMID: 16716915) (PMID: 17562491) (PMID: 19653314) (PMID: 21924261).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092207422D          

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M  END


  Mrv1652309092207422D          

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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
 16 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 27 33  1  0  0  0  0
  8 33  1  0  0  0  0
 33 34  2  0  0  0  0
 27 35  1  0  0  0  0
  6 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0280084

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CC[C@H]1C[C@@]2(CC=C(C)C)C(=O)C(C(=O)C3=CC=CC=C3)=C(O)[C@](CC=C(C)C)(C2=O)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C33H42O4/c1-21(2)14-15-25-20-32(18-16-22(3)4)28(35)26(27(34)24-12-10-9-11-13-24)29(36)33(30(32)37,31(25,7)8)19-17-23(5)6/h9-14,16-17,25,36H,15,18-20H2,1-8H3/t25-,32-,33+/m0/s1

> <INCHI_KEY>
LTDDHUQIMJCFPX-DZMJNENTSA-N

> <FORMULA>
C33H42O4

> <MOLECULAR_WEIGHT>
502.695

> <EXACT_MASS>
502.308309832

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
57.30205605249229

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,5R,7S)-3-benzoyl-4-hydroxy-6,6-dimethyl-1,5,7-tris(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione

> <JCHEM_LOGP>
8.187735697

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.521160934721245

> <JCHEM_PKA_STRONGEST_BASIC>
-7.57981480705458

> <JCHEM_POLAR_SURFACE_AREA>
71.44

> <JCHEM_REFRACTIVITY>
153.94450000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5R,7S)-3-benzoyl-4-hydroxy-6,6-dimethyl-1,5,7-tris(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.705  -2.239   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.935  -0.906   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.705   0.428   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.395  -0.906   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.625   0.428   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.085   0.428   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.504  -0.995   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.927  -1.584   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.927  -3.124   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.593  -3.894   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.593  -5.434   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.740  -6.204   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.927  -6.204   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.350  -0.995   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.439  -2.084   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       3.939   0.428   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.479   0.428   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       6.249   1.762   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       6.249  -0.906   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.789  -0.906   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.559  -2.239   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.789  -3.573   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.249  -3.573   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.479  -2.239   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.350   1.851   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       4.439   2.940   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       1.927   2.440   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.927   3.980   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.261   4.750   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.261   6.290   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.594   7.060   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       1.927   7.060   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.424   0.428   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       0.178   1.333   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       0.504   1.851   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       0.009   3.309   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -0.954   2.346   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   35                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   14   33                                             
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    8   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   25                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   24                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   19                                                       
CONECT   25   16   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   33   35                                             
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33   27    8   34                                                  
CONECT   34   33                                                            
CONECT   35   27    6   36   37                                             
CONECT   36   35                                                            
CONECT   37   35                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   78    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₄₂O₄

Average Mass

502.6950 Da

Monoisotopic Mass

502.30831 Da

IUPAC Name

(1R,5R,7S)-3-benzoyl-4-hydroxy-6,6-dimethyl-1,5,7-tris(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione

Traditional Name

(1R,5R,7S)-3-benzoyl-4-hydroxy-6,6-dimethyl-1,5,7-tris(3-methylbut-2-en-1-yl)bicyclo[3.3.1]non-3-ene-2,9-dione

CAS Registry Number

Not Available

SMILES

CC(C)=CC[C@H]1C[C@@]2(CC=C(C)C)C(=O)C(C(=O)C3=CC=CC=C3)=C(O)[C@](CC=C(C)C)(C2=O)C1(C)C

InChI Identifier

InChI=1S/C33H42O4/c1-21(2)14-15-25-20-32(18-16-22(3)4)28(35)26(27(34)24-12-10-9-11-13-24)29(36)33(30(32)37,31(25,7)8)19-17-23(5)6/h9-14,16-17,25,36H,15,18-20H2,1-8H3/t25-,32-,33+/m0/s1

InChI Key

LTDDHUQIMJCFPX-DZMJNENTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hypericum scabrum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Bicyclic monoterpenoids

Alternative Parents

Substituents

Aromatic monoterpenoid
Bicyclic monoterpenoid
Benzoyl
Aryl ketone
Cyclohexenone
Monocyclic benzene moiety
Benzenoid
Vinylogous acid
Ketone
Enol
Organic oxygen compound
Carbonyl group
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

enone (CHEBI:65850 )
bridged compound (CHEBI:65850 )
aromatic ketone (CHEBI:65850 )
enol (CHEBI:65850 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.19	ChemAxon
pKa (Strongest Acidic)	3.52	ChemAxon
pKa (Strongest Basic)	-7.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	71.44 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	153.94 m³·mol⁻¹	ChemAxon
Polarizability	57.3 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00038318

Chemspider ID

10205580

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

65850

Good Scents ID

Not Available

References

General References

Alves TM, Alves R, Romanha AJ, Zani CL, dos Santos MH, Nagem TJ: Biological activities of 7-epiclusianone. J Nat Prod. 1999 Feb;62(2):369-71. doi: 10.1021/np9803833. [PubMed:10075791 ]
Cruz AJ, Lemos VS, dos Santos MH, Nagem TJ, Cortes SF: Vascular effects of 7-epiclusianone, a prenylated benzophenone from Rheedia gardneriana, on the rat aorta. Phytomedicine. 2006 Jun;13(6):442-5. doi: 10.1016/j.phymed.2005.01.014. Epub 2005 Sep 16. [PubMed:16716915 ]
Neves JS, Coelho LP, Cordeiro RS, Veloso MP, Rodrigues e Silva PM, dos Santos MH, Martins MA: Antianaphylactic properties of 7-epiclusianone, a tetraprenylated benzophenone isolated from Garcinia brasiliensis. Planta Med. 2007 Jun;73(7):644-9. doi: 10.1055/s-2007-981534. Epub 2007 Jun 11. [PubMed:17562491 ]
Murata RM, Yatsuda R, dos Santos MH, Kohn LK, Martins FT, Nagem TJ, Alencar SM, de Carvalho JE, Rosalen PL: Antiproliferative effect of benzophenones and their influence on cathepsin activity. Phytother Res. 2010 Mar;24(3):379-83. doi: 10.1002/ptr.2954. [PubMed:19653314 ]
Santa-Cecilia FV, Freitas LA, Vilela FC, Veloso Cde C, da Rocha CQ, Moreira ME, Dias DF, Giusti-Paiva A, dos Santos MH: Antinociceptive and anti-inflammatory properties of 7-epiclusianone, a prenylated benzophenone from Garcinia brasiliensis. Eur J Pharmacol. 2011 Nov 16;670(1):280-5. doi: 10.1016/j.ejphar.2011.08.032. Epub 2011 Sep 10. [PubMed:21924261 ]
LOTUS database [Link]

Showing NP-Card for 7-epiclusianone (NP0280084)

MOL for NP0280084 (7-epiclusianone)

3D MOL for NP0280084 (7-epiclusianone)

3D SDF for NP0280084 (7-epiclusianone)

3D-SDF for NP0280084 (7-epiclusianone)

PDB for NP0280084 (7-epiclusianone)

3D PDB for NP0280084 (7-epiclusianone)

SMILES for NP0280084 (7-epiclusianone)

INCHI for NP0280084 (7-epiclusianone)

Structure for NP0280084 (7-epiclusianone)

3D Structure for NP0280084 (7-epiclusianone)