NP-MRD: Showing NP-Card for (2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone (NP0280022)

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Record Information

Version

2.0

Created at

2022-09-09 05:36:53 UTC

Updated at

2022-09-09 05:36:54 UTC

NP-MRD ID

NP0280022

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone

Description

(2'R)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-1',2',3',4',9,10-hexahydro-[2,9'-bianthracene]-1',4',9,10-tetrone belongs to the class of organic compounds known as arylnaphthalene lignans. These are lignans containing the arylnaphthalene skeleton, especially 9-(2H-1,3-benzodioxol-5-yl)-1H,3H-naphtho[2,3-c]furan-1-one or a derivative thereof. Arylnaphthalene lignans occur in nature and exhibit diverse biological activities. (2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone is found in Senna sophera. Based on a literature review very few articles have been published on (2'R)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-1',2',3',4',9,10-hexahydro-[2,9'-bianthracene]-1',4',9,10-tetrone.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092207362D          

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  Mrv1652309092207362D          

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    4.0573   -3.0451    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 13 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 24 31  1  0  0  0  0
 31 32  1  0  0  0  0
 18 32  1  0  0  0  0
 32 33  2  0  0  0  0
 12 34  1  0  0  0  0
  7 34  1  0  0  0  0
 34 35  2  0  0  0  0
  3 35  1  0  0  0  0
 11 36  1  0  0  0  0
 36 37  2  0  0  0  0
 36 38  1  0  0  0  0
 38 39  1  6  0  0  0
 38 40  1  0  0  0  0
 40 41  1  0  0  0  0
 10 41  1  0  0  0  0
 41 42  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0280022

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(O)=C2C(O)=C3C(=O)C[C@@H](C)C(=O)C3=C(C2=C1)C1=C(OC)C=C2C(=O)C3=CC(C)=CC(O)=C3C(=O)C2=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C32H24O10/c1-11-5-15-22(17(33)6-11)30(38)24-16(29(15)37)10-20(42-4)26(32(24)40)23-14-8-13(41-3)9-19(35)21(14)31(39)25-18(34)7-12(2)28(36)27(23)25/h5-6,8-10,12,33,35,39-40H,7H2,1-4H3/t12-/m1/s1

> <INCHI_KEY>
ZKZUYYVXZXHDJO-GFCCVEGCSA-N

> <FORMULA>
C32H24O10

> <MOLECULAR_WEIGHT>
568.534

> <EXACT_MASS>
568.136946973

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
58.143219457542195

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2'R)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-1',2',3',4',9,10-hexahydro-[2,9'-bianthracene]-1',4',9,10-tetrone

> <JCHEM_LOGP>
6.195715541666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.4266742699775

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.7666191418708035

> <JCHEM_PKA_STRONGEST_BASIC>
-4.5576949883000175

> <JCHEM_POLAR_SURFACE_AREA>
167.66

> <JCHEM_REFRACTIVITY>
152.2583

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2'R)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -1.334  -6.930   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000  -9.240   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334 -10.010   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.334 -11.550   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       4.001 -11.550   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.334  -5.390   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       5.335   0.000   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       7.574  -5.684   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.668 -10.010   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0       6.668 -11.550   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   35                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   34                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   41                                                  
CONECT   11   10   12   36                                                  
CONECT   12   11   13   34                                                  
CONECT   13   12   14   20                                                  
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17   19   32                                                  
CONECT   19   18   20   22                                                  
CONECT   20   19   13   21                                                  
CONECT   21   20                                                            
CONECT   22   19   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   31                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   24   32                                                  
CONECT   32   31   18   33                                                  
CONECT   33   32                                                            
CONECT   34   12    7   35                                                  
CONECT   35   34    3                                                       
CONECT   36   11   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41                                                       
CONECT   41   40   10   42                                                  
CONECT   42   41                                                            
MASTER        0    0    0    0    0    0    0    0   42    0   94    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₂H₂₄O₁₀

Average Mass

568.5340 Da

Monoisotopic Mass

568.13695 Da

IUPAC Name

(2'R)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-1',2',3',4',9,10-hexahydro-[2,9'-bianthracene]-1',4',9,10-tetrone

Traditional Name

(2'R)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone

CAS Registry Number

Not Available

SMILES

COC1=CC(O)=C2C(O)=C3C(=O)C[C@@H](C)C(=O)C3=C(C2=C1)C1=C(OC)C=C2C(=O)C3=CC(C)=CC(O)=C3C(=O)C2=C1O

InChI Identifier

InChI=1S/C32H24O10/c1-11-5-15-22(17(33)6-11)30(38)24-16(29(15)37)10-20(42-4)26(32(24)40)23-14-8-13(41-3)9-19(35)21(14)31(39)25-18(34)7-12(2)28(36)27(23)25/h5-6,8-10,12,33,35,39-40H,7H2,1-4H3/t12-/m1/s1

InChI Key

ZKZUYYVXZXHDJO-GFCCVEGCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Senna sophera	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as arylnaphthalene lignans. These are lignans containing the arylnaphthalene skeleton, especially 9-(2H-1,3-benzodioxol-5-yl)-1H,3H-naphtho[2,3-c]furan-1-one or a derivative thereof. Arylnaphthalene lignans occur in nature and exhibit diverse biological activities.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Arylnaphthalene lignans

Sub Class

Not Available

Direct Parent

Arylnaphthalene lignans

Alternative Parents

Substituents

Arylnaphthalene lignan skeleton
9,10-anthraquinone
Anthraquinone
1,4-anthraquinone
Anthracene
1-naphthol
Tetralin
Anisole
Quinone
Aryl alkyl ketone
Aryl ketone
Alkyl aryl ether
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Benzenoid
Vinylogous acid
Ketone
Ether
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.2	ChemAxon
pKa (Strongest Acidic)	6.77	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	167.66 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	152.26 m³·mol⁻¹	ChemAxon
Polarizability	58.14 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163195627

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone (NP0280022)

MOL for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

3D MOL for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

3D SDF for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

3D-SDF for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

PDB for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

3D PDB for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

SMILES for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

INCHI for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

Structure for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)

3D Structure for NP0280022 ((2'r)-1,5',8,10'-tetrahydroxy-3,7'-dimethoxy-2',6-dimethyl-2',3'-dihydro-[2,9'-bianthracene]-1',4',9,10-tetrone)