NP-MRD: Showing NP-Card for [(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate (NP0279906)

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Record Information

Version

2.0

Created at

2022-09-09 05:27:43 UTC

Updated at

2022-09-09 05:27:43 UTC

NP-MRD ID

NP0279906

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate

Description

Tenuifoliside A belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring. [(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate is found in Polygala sibirica and Polygala tenuifolia. Based on a literature review very few articles have been published on Tenuifoliside A.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092207272D          

 48 51  0  0  1  0            999 V2000
    8.8291   -6.6831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0445   -6.9381    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4314   -6.3860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6468   -6.6410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0337   -6.0889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2490   -6.3439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6360   -5.7918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8513   -6.0468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.2382   -5.4948    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
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  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
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  8 10  1  0  0  0  0
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  5 42  2  0  0  0  0
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  3 46  1  0  0  0  0
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 47 48  1  0  0  0  0
M  END

     RDKit          3D

 86 89  0  0  0  0  0  0  0  0999 V2000
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 48 86  1  0
M  END


  Mrv1652309092207272D          

 48 51  0  0  1  0            999 V2000
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    6.0337   -6.0889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2490   -6.3439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6360   -5.7918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8513   -6.0468    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6798   -6.8538    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2382   -5.4948    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4536   -5.7497    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1987   -6.5343    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6836   -7.2018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3737   -6.5343    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8888   -7.2018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0683   -7.1155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1187   -5.7497    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7862   -5.2648    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3812   -4.5460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5562   -4.5374    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1912   -4.5460    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7712   -3.8359    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9463   -3.8445    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5263   -3.1344    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2987   -3.1431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7186   -2.4330    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5436   -2.4416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9486   -3.1604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9635   -1.7315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7885   -1.7401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2084   -1.0300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8034   -0.3113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2234    0.3988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9785   -0.3026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5585   -1.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9313   -2.4157    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5113   -1.7056    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7562   -2.4070    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1612   -1.6883    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1762   -3.1172    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0012   -3.1085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2052   -5.2820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9898   -5.0270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1613   -4.2201    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9460   -3.9651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6029   -5.5791    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3875   -5.3241    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0006   -5.8762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 11 10  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 11 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
 18 21  1  1  0  0  0
 22 21  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 34 35  2  0  0  0  0
 29 35  1  0  0  0  0
 24 36  1  0  0  0  0
 36 37  1  1  0  0  0
 36 38  1  0  0  0  0
 38 39  1  6  0  0  0
 38 40  1  0  0  0  0
 22 40  1  0  0  0  0
 40 41  1  1  0  0  0
  5 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 43 46  2  0  0  0  0
  3 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0279906

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(\C=C\C(=O)O[C@H]2[C@H](O)[C@@H](CO)O[C@@]2(CO)O[C@@H]2O[C@H](COC(=O)C3=CC=C(O)C=C3)[C@@H](O)[C@H](O)[C@H]2O)=CC(OC)=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C31H38O17/c1-41-18-10-15(11-19(42-2)27(18)43-3)4-9-22(35)46-28-24(37)20(12-32)47-31(28,14-33)48-30-26(39)25(38)23(36)21(45-30)13-44-29(40)16-5-7-17(34)8-6-16/h4-11,20-21,23-26,28,30,32-34,36-39H,12-14H2,1-3H3/b9-4+/t20-,21-,23-,24-,25+,26-,28+,30+,31+/m1/s1

> <INCHI_KEY>
BBUQNXDJRVCZTI-AOVTWVLSSA-N

> <FORMULA>
C31H38O17

> <MOLECULAR_WEIGHT>
682.628

> <EXACT_MASS>
682.210899764

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
86

> <JCHEM_AVERAGE_POLARIZABILITY>
67.87009202853153

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2S,3S,4R,5R)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2E)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate

> <JCHEM_LOGP>
0.2237764843333333

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.11389385581454

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.497673573112118

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9814532563443565

> <JCHEM_POLAR_SURFACE_AREA>
249.58999999999995

> <JCHEM_REFRACTIVITY>
159.5343

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2S,3S,4R,5R)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2E)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      16.481 -12.475   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      15.016 -12.951   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      13.872 -11.921   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      12.407 -12.396   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.263 -11.366   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.798 -11.842   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.654 -10.811   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.189 -11.287   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       6.869 -12.794   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       6.045 -10.257   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.580 -10.733   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.104 -12.197   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       5.009 -13.443   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.564 -12.197   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.659 -13.443   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       0.127 -13.282   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       2.088 -10.733   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       3.334  -9.828   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.578  -8.486   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       1.038  -8.470   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       4.090  -8.486   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       3.306  -7.160   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       1.766  -7.176   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       0.982  -5.851   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.557  -5.867   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -1.341  -4.542   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -2.881  -4.558   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -3.637  -5.899   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -3.665  -3.232   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -5.205  -3.248   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -5.989  -1.923   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -5.233  -0.581   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -6.017   0.745   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -3.693  -0.565   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -2.909  -1.890   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       1.738  -4.509   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       0.954  -3.184   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0       3.278  -4.493   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0       4.034  -3.151   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0       4.062  -5.819   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0       5.602  -5.803   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      11.583  -9.860   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      13.048  -9.384   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      13.368  -7.877   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      14.832  -7.402   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      14.192 -10.414   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      15.657  -9.938   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      16.801 -10.969   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   46                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   42                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   18                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17   11   19   21                                             
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22                                                       
CONECT   22   21   23   40                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   36                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   35                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   29                                                       
CONECT   36   24   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   22   41                                                  
CONECT   41   40                                                            
CONECT   42    5   43                                                       
CONECT   43   42   44   46                                                  
CONECT   44   43   45                                                       
CONECT   45   44                                                            
CONECT   46   43    3   47                                                  
CONECT   47   46   48                                                       
CONECT   48   47                                                            
MASTER        0    0    0    0    0    0    0    0   48    0  102    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₁H₃₈O₁₇

Average Mass

682.6280 Da

Monoisotopic Mass

682.21090 Da

IUPAC Name

[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2S,3S,4R,5R)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2E)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate

Traditional Name

[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2S,3S,4R,5R)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2E)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate

CAS Registry Number

Not Available

SMILES

COC1=CC(\C=C\C(=O)O[C@H]2[C@H](O)[C@@H](CO)O[C@@]2(CO)O[C@@H]2O[C@H](COC(=O)C3=CC=C(O)C=C3)[C@@H](O)[C@H](O)[C@H]2O)=CC(OC)=C1OC

InChI Identifier

InChI=1S/C31H38O17/c1-41-18-10-15(11-19(42-2)27(18)43-3)4-9-22(35)46-28-24(37)20(12-32)47-31(28,14-33)48-30-26(39)25(38)23(36)21(45-30)13-44-29(40)16-5-7-17(34)8-6-16/h4-11,20-21,23-26,28,30,32-34,36-39H,12-14H2,1-3H3/b9-4+/t20-,21-,23-,24-,25+,26-,28+,30+,31+/m1/s1

InChI Key

BBUQNXDJRVCZTI-AOVTWVLSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Polygala sibirica	LOTUS Database	35616633
Polygala tenuifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Hydroxycinnamic acids and derivatives

Direct Parent

Coumaric acids and derivatives

Alternative Parents

Substituents

Cinnamic acid ester
Coumaric acid or derivatives
P-hydroxybenzoic acid alkyl ester
P-hydroxybenzoic acid ester
O-glycosyl compound
Glycosyl compound
Disaccharide
C-glycosyl compound
Benzoate ester
Benzoic acid or derivatives
Phenoxy compound
Methoxybenzene
Styrene
Phenol ether
Benzoyl
Anisole
1-hydroxy-2-unsubstituted benzenoid
Ketal
Phenol
Fatty acid ester
Alkyl aryl ether
Fatty acyl
Benzenoid
Oxane
Dicarboxylic acid or derivatives
Monocyclic benzene moiety
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Ether
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.22	ChemAxon
pKa (Strongest Acidic)	8.5	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	249.59 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	159.53 m³·mol⁻¹	ChemAxon
Polarizability	67.87 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00037899

Chemspider ID

84451608

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146014675

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate (NP0279906)

MOL for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

3D MOL for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

3D SDF for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

3D-SDF for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

PDB for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

3D PDB for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

SMILES for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

INCHI for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

Structure for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)

3D Structure for NP0279906 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2s,3s,4r,5r)-4-hydroxy-2,5-bis(hydroxymethyl)-3-{[(2e)-3-(3,4,5-trimethoxyphenyl)prop-2-enoyl]oxy}oxolan-2-yl]oxy}oxan-2-yl]methyl 4-hydroxybenzoate)