NP-MRD: Showing NP-Card for (1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one (NP0279806)

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Record Information

Version

2.0

Created at

2022-09-09 05:19:31 UTC

Updated at

2022-09-09 05:19:31 UTC

NP-MRD ID

NP0279806

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one

Description

Sibiricinone D belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. (1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one is found in Leonurus sibiricus. (1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one was first documented in 2004 (PMID: 15104513). Based on a literature review very few articles have been published on Sibiricinone D.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092207192D          

 26 29  0  0  1  0            999 V2000
    6.2800   -0.7166    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6745   -1.2769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8865   -1.0327    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2257   -1.5267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5517   -1.0510    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3075   -1.8390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4826   -1.8503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2170   -1.0692    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8777   -0.5752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6115   -1.6296    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7940   -2.4341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8234   -1.3854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2179   -1.9457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6409   -0.5808    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1471   -0.3366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2464   -0.0204    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0639    0.7841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3032    0.4646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6172    1.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6694    1.3445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4574    1.1003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6399    0.2957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0344   -0.2646    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8594   -0.2534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7959   -0.2629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6208   -0.2517    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  5  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 16 14  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 17 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 16 23  1  0  0  0  0
  8 23  1  0  0  0  0
 23 24  1  1  0  0  0
  5 25  1  0  0  0  0
 25 26  1  0  0  0  0
  3 26  1  0  0  0  0
M  END

     RDKit          3D

 60 63  0  0  0  0  0  0  0  0999 V2000
    6.6700    0.9345   -0.5017 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7080    0.4744   -1.3965 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6816   -0.0940   -0.6907 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3544    0.6402   -0.9273 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3951   -0.3980   -0.3292 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3899   -0.1985    1.1421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9742    0.3444    1.3870 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2289   -0.2356    0.2292 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1380   -0.2921   -0.8234 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1153   -1.6556    0.5894 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2922   -2.5728   -0.5680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2327   -1.7393    1.5865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3471   -2.6397    2.3851 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2320   -0.6319    1.5549 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0272    0.3154    2.5166 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2110   -0.1001    0.1338 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4720    0.5799   -0.2542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8975    1.7326    0.5807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5728   -0.4918   -0.1241 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4072    0.9026   -1.7320 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1958    0.2747   -2.3930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9173    0.7462   -1.7478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9429    0.5862   -0.2317 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8167    1.9805    0.3393 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1041   -1.6799   -0.6896 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3560   -1.3676   -1.1419 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0923    0.1223    0.1302 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4560    1.5281   -1.0146 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1294    1.6339    0.1923 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8757   -0.0427    0.3770 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3234    1.5886   -0.3595 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1728    0.7685   -2.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1310    0.5285    1.5082 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5619   -1.1438    1.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6802   -0.1148    2.3758 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0612    1.4191    1.4292 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7774   -2.0482    1.1669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2017   -3.2120   -0.3663 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5372   -3.3361   -0.6645 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3442   -2.0887   -1.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2762   -1.0373    1.7017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5352    0.0742    3.3187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2253   -1.0473   -0.4948 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9981    2.6195   -0.1148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2793    1.9637    1.4471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9484    1.6196    0.9874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1538   -1.5048   -0.2294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0596   -0.3728    0.8672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3509   -0.3473   -0.8840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3593    2.0064   -1.9151 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2957    0.5440   -2.2916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2696   -0.8050   -2.5171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1812    0.7015   -3.4403 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0891    0.1986   -2.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7878    1.8130   -2.0616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8799    2.0409    1.4186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6003    2.6582   -0.1133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1398    2.4009   -0.0933 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0923   -2.3559    0.1970 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4848   -2.1872   -1.4680 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  6
  8 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 17 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  1
  5 25  1  0
 25 26  1  0
 26  3  1  0
  5  9  1  6
 23 16  1  0
 23  8  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  3 30  1  1
  4 31  1  0
  4 32  1  0
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
 10 37  1  1
 11 38  1  0
 11 39  1  0
 11 40  1  0
 14 41  1  1
 15 42  1  0
 16 43  1  6
 18 44  1  0
 18 45  1  0
 18 46  1  0
 19 47  1  0
 19 48  1  0
 19 49  1  0
 20 50  1  0
 20 51  1  0
 21 52  1  0
 21 53  1  0
 22 54  1  0
 22 55  1  0
 24 56  1  0
 24 57  1  0
 24 58  1  0
 25 59  1  0
 25 60  1  0
M  END


  Mrv1652309092207192D          

 26 29  0  0  1  0            999 V2000
    6.2800   -0.7166    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6745   -1.2769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8865   -1.0327    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2257   -1.5267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5517   -1.0510    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3075   -1.8390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4826   -1.8503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2170   -1.0692    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8777   -0.5752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6115   -1.6296    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7940   -2.4341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8234   -1.3854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2179   -1.9457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6409   -0.5808    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1471   -0.3366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2464   -0.0204    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0639    0.7841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3032    0.4646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6172    1.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6694    1.3445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4574    1.1003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6399    0.2957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0344   -0.2646    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8594   -0.2534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7959   -0.2629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6208   -0.2517    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  5  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 16 14  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 17 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 16 23  1  0  0  0  0
  8 23  1  0  0  0  0
 23 24  1  1  0  0  0
  5 25  1  0  0  0  0
 25 26  1  0  0  0  0
  3 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0279806

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@H]1C[C@]2(CC[C@@]3(O2)[C@H](C)C(=O)[C@@H](O)[C@H]2C(C)(C)CCC[C@]32C)CO1

> <INCHI_IDENTIFIER>
InChI=1S/C21H34O5/c1-13-15(22)16(23)17-18(2,3)7-6-8-19(17,4)21(13)10-9-20(26-21)11-14(24-5)25-12-20/h13-14,16-17,23H,6-12H2,1-5H3/t13-,14-,16-,17+,19+,20-,21-/m1/s1

> <INCHI_KEY>
NZPBUNQOXRUEEE-XZIAOLDNSA-N

> <FORMULA>
C21H34O5

> <MOLECULAR_WEIGHT>
366.498

> <EXACT_MASS>
366.240624195

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
40.88868068006033

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2S,4S,4aS,5'R,5''R,8aS)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-octahydro-2H-dispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one

> <JCHEM_LOGP>
3.3366614006666655

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.233428947894282

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.11535480309637

> <JCHEM_PKA_STRONGEST_BASIC>
-3.62306884482412

> <JCHEM_POLAR_SURFACE_AREA>
64.99000000000001

> <JCHEM_REFRACTIVITY>
96.6434

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,4S,4aS,5'R,5''R,8aS)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      11.723  -1.338   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      10.592  -2.384   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       9.121  -1.928   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.888  -2.850   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.630  -1.962   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.174  -3.433   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.634  -3.454   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.138  -1.996   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       5.372  -1.074   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.008  -3.042   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.349  -4.544   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.537  -2.586   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       0.407  -3.632   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       1.196  -1.084   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -0.275  -0.628   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.327  -0.038   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.986   1.464   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.566   0.867   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.152   2.758   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.116   2.510   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.587   2.054   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.928   0.552   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.798  -0.494   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.337  -0.473   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.086  -0.491   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       8.626  -0.470   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   26                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    9   25                                             
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   23                                             
CONECT    9    8    5                                                       
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   23                                                  
CONECT   17   16   18   19   20                                             
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   17   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   16    8   24                                             
CONECT   24   23                                                            
CONECT   25    5   26                                                       
CONECT   26   25    3                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₄O₅

Average Mass

366.4980 Da

Monoisotopic Mass

366.24062 Da

IUPAC Name

(1R,2S,4S,4aS,5'R,5''R,8aS)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-octahydro-2H-dispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one

Traditional Name

(1R,2S,4S,4aS,5'R,5''R,8aS)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one

CAS Registry Number

Not Available

SMILES

CO[C@H]1C[C@]2(CC[C@@]3(O2)[C@H](C)C(=O)[C@@H](O)[C@H]2C(C)(C)CCC[C@]32C)CO1

InChI Identifier

InChI=1S/C21H34O5/c1-13-15(22)16(23)17-18(2,3)7-6-8-19(17,4)21(13)10-9-20(26-21)11-14(24-5)25-12-20/h13-14,16-17,23H,6-12H2,1-5H3/t13-,14-,16-,17+,19+,20-,21-/m1/s1

InChI Key

NZPBUNQOXRUEEE-XZIAOLDNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Leonurus sibiricus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Grindelane diterpenoid
Cyclic alcohol
Tetrahydrofuran
Ketone
Secondary alcohol
Cyclic ketone
Acetal
Ether
Dialkyl ether
Oxacycle
Organoheterocyclic compound
Alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.34	ChemAxon
pKa (Strongest Acidic)	13.12	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	64.99 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	96.64 m³·mol⁻¹	ChemAxon
Polarizability	40.89 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00043159

Chemspider ID

10189050

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15726754

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Boalino DM, McLean S, Reynolds WF, Tinto WF: Labdane diterpenes of Leonurus sibiricus. J Nat Prod. 2004 Apr;67(4):714-7. doi: 10.1021/np030480i. [PubMed:15104513 ]
LOTUS database [Link]

Showing NP-Card for (1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one (NP0279806)

MOL for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

3D MOL for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

3D SDF for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

3D-SDF for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

PDB for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

3D PDB for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

SMILES for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

INCHI for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

Structure for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)

3D Structure for NP0279806 ((1r,2s,4s,4as,5'r,5''r,8as)-4-hydroxy-5''-methoxy-2,5,5,8a-tetramethyl-hexahydrodispiro[naphthalene-1,2':5',3''-bis(oxolane)]-3-one)