NP-MRD: Showing NP-Card for (5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one (NP0278412)

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Record Information

Version

2.0

Created at

2022-09-09 03:25:36 UTC

Updated at

2022-09-09 03:25:36 UTC

NP-MRD ID

NP0278412

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one

Description

Alpha-Atlantone, also known as α-atlantone, belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one is found in Curcuma longa. (5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one was first documented in 2012 (PMID: 21979930). Based on a literature review a small amount of articles have been published on alpha-Atlantone (PMID: 33867898) (PMID: 30802619) (PMID: 24349101).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 38  0  0  0  0  0  0  0  0999 V2000
    4.9064    2.1666    0.0834 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8975    1.0286    0.0856 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4739   -0.3025    0.1494 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6671    1.3653    0.0269 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4238    0.6482    0.0056 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4074    1.3684   -0.0670 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3100   -0.7589    0.0707 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1209   -1.3066   -0.0236 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2462   -2.8502    0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1636   -0.8167   -0.3033 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9795   -0.9987    1.0018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3626   -0.6030    0.9184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7384    0.4220    0.1903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1510    0.8765    0.0715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6900    1.1695   -0.5538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6902    0.1895   -1.1780 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2963    2.3138   -0.9407 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7138    1.8984    0.8052 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4439    3.1058    0.4189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1557   -0.8017    1.0860 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6187   -0.2589    0.1428 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1522   -0.8932   -0.7359 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4949    2.5023   -0.0203 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1934   -1.4111    0.2048 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1194   -3.1978   -0.4597 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3063   -3.1149    1.1645 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6343   -3.3184   -0.3865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6209   -1.8192   -0.8429 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4562   -0.4061    1.8116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9085   -2.0512    1.3677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1280   -1.1473    1.4593 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8078    0.2420    0.7003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1848    1.9518    0.4009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4217    0.8019   -1.0058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2023    1.7180   -1.3669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2568    1.9012    0.1119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4465   -0.3294   -1.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1047    0.7162   -1.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 16  1  0
 16 15  1  0
 15 13  1  0
 13 14  1  0
 13 12  2  0
 12 11  1  0
 11 10  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  3 20  1  0
  3 21  1  0
  3 22  1  0
  4 23  1  0
  7 24  1  0
  9 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  6
 16 37  1  0
 16 38  1  0
 15 35  1  0
 15 36  1  0
 14 32  1  0
 14 33  1  0
 14 34  1  0
 12 31  1  0
 11 29  1  0
 11 30  1  0
M  END


  Mrv1652309092205252D          

 16 16  0  0  1  0            999 V2000
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
 10  8  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 10 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0278412

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CC(=O)\C=C(\C)[C@@H]1CCC(C)=CC1

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O/c1-11(2)9-15(16)10-13(4)14-7-5-12(3)6-8-14/h5,9-10,14H,6-8H2,1-4H3/b13-10-/t14-/m0/s1

> <INCHI_KEY>
OJEFBZMKKJTKKK-ZVHGMHCTSA-N

> <FORMULA>
C15H22O

> <MOLECULAR_WEIGHT>
218.34

> <EXACT_MASS>
218.167065328

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
26.86951538197608

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5Z)-2-methyl-6-[(1R)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one

> <JCHEM_LOGP>
4.361865823666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-3.9284720215575653

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
71.9502

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5Z)-2-methyl-6-[(1R)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   16                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   10                                                       
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Value	Source
a-Atlantone	Generator
Α-atlantone	Generator

Chemical Formula

C₁₅H₂₂O

Average Mass

218.3400 Da

Monoisotopic Mass

218.16707 Da

IUPAC Name

(5Z)-2-methyl-6-[(1R)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one

Traditional Name

(5Z)-2-methyl-6-[(1R)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one

CAS Registry Number

Not Available

SMILES

CC(C)=CC(=O)\C=C(\C)[C@@H]1CCC(C)=CC1

InChI Identifier

InChI=1S/C15H22O/c1-11(2)9-15(16)10-13(4)14-7-5-12(3)6-8-14/h5,9-10,14H,6-8H2,1-4H3/b13-10-/t14-/m0/s1

InChI Key

OJEFBZMKKJTKKK-ZVHGMHCTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Curcuma longa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Bisabolane sesquiterpenoid
Sesquiterpenoid
Alpha,beta-unsaturated ketone
Enone
Acryloyl-group
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.36	ChemAxon
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	17.07 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	71.95 m³·mol⁻¹	ChemAxon
Polarizability	26.87 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00011642

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12299867

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Amparo TR, Seibert JB, Silveira BM, Costa FSF, Almeida TC, Braga SFP, da Silva GN, Dos Santos ODH, de Souza GHB: Brazilian essential oils as source for the discovery of new anti-COVID-19 drug: a review guided by in silico study. Phytochem Rev. 2021;20(5):1013-1032. doi: 10.1007/s11101-021-09754-4. Epub 2021 Apr 13. [PubMed:33867898 ]
Chaudhary A, Sood S, Kaur P, Kumar N, Thakur A, Gulati A, Singh B: Antifungal sesquiterpenes from Cedrus deodara. Planta Med. 2012 Jan;78(2):186-8. doi: 10.1055/s-0031-1280264. Epub 2011 Oct 6. [PubMed:21979930 ]
Akter J, Islam MZ, Takara K, Hossain MA, Sano A: Isolation and structural elucidation of antifungal compounds from Ryudai gold (Curcuma longa) against Fusarium solani sensu lato isolated from American manatee. Comp Biochem Physiol C Toxicol Pharmacol. 2019 May;219:87-94. doi: 10.1016/j.cbpc.2019.02.011. Epub 2019 Feb 22. [PubMed:30802619 ]
Orellana-Paucar AM, Afrikanova T, Thomas J, Aibuldinov YK, Dehaen W, de Witte PA, Esguerra CV: Insights from zebrafish and mouse models on the activity and safety of ar-turmerone as a potential drug candidate for the treatment of epilepsy. PLoS One. 2013 Dec 13;8(12):e81634. doi: 10.1371/journal.pone.0081634. eCollection 2013. [PubMed:24349101 ]
LOTUS database [Link]

Showing NP-Card for (5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one (NP0278412)

MOL for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

3D MOL for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

3D SDF for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

3D-SDF for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

PDB for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

3D PDB for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

SMILES for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

INCHI for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

Structure for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)

3D Structure for NP0278412 ((5z)-2-methyl-6-[(1r)-4-methylcyclohex-3-en-1-yl]hepta-2,5-dien-4-one)