NP-MRD: Showing NP-Card for 6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione (NP0277727)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-09 02:30:16 UTC

Updated at

2022-09-09 02:30:16 UTC

NP-MRD ID

NP0277727

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione

Description

Haematopodin belongs to the class of organic compounds known as pyrrolo[4,3,2-de]quinolines. These are organic heterocyclic compounds with a structure based on the Pyrrolo[4,3,2-de]quinoline skeleton. Haematopodin is the more stable breakdown product of Haematopodin B. Both compounds are found in the mushroom Mycena haematopus, although haematopodin only occurs in trace amounts in fresh fruit bodies. Haematopodin is a moderately basic compound (based on its pKa). Outside of the human body, haematopodin has been detected, but not quantified in, root vegetables. This could make haematopodin a potential biomarker for the consumption of these foods. A chemical synthesis for haematopodin was reported in 1996. Key steps in the synthesis involved the addition of 3-[(2,4-dimethoxybenzyl)amino]-1-propanol to the indolo-6,7-quinone and cyclization of the resulting adduct with trifluoroacetic acid. 6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione is found in Mycena haematopus. Similar pigments (with the 1,3,4,5-tetrahydropyrrolo[4,3,2-de]quinoline structure), known as batzellins and damirones, have been found in sea sponges.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 33  0  0  0  0  0  0  0  0999 V2000
    1.9246    3.7452   -1.4476 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7987    2.5852   -1.0024 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4522    2.0236   -0.8287 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3573    0.7984   -0.3569 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5460    0.0604   -0.0321 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5154   -1.1962    0.4556 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8483   -1.5542    0.6372 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6476   -0.5178    0.2603 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8479    0.4903   -0.1567 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0132    1.8420   -0.6751 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1779    2.2839   -0.8086 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2256   -1.8619    0.6833 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9410   -1.2808   -0.0185 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0917   -1.8074    0.5273 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2283   -1.1695    0.0692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1744    0.2336    0.6705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0891    0.9652   -0.0889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9228    0.1489   -0.1484 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4475    2.5585   -1.0656 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1972   -2.5161    1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6770   -0.4681    0.2739 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3819   -2.9301    0.3349 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0078   -1.9806    1.7711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9066   -1.6743   -1.0799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2028   -1.0917   -1.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1348   -1.6859    0.4066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9014    0.1276    1.7307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1636    0.7457    0.5538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4874    1.2063   -1.1182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9273    1.9197    0.4807 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4 18  1  0
 18 17  1  0
 17 16  1  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9  5  2  0
  9 10  1  0
 10 11  2  0
 10  2  1  0
  5  4  1  0
 13 18  1  0
  5  6  1  0
  3 19  1  0
 17 29  1  0
 17 30  1  0
 16 27  1  0
 16 28  1  0
 15 25  1  0
 15 26  1  0
 13 24  1  6
 12 22  1  0
 12 23  1  0
  7 20  1  0
  8 21  1  0
M  END


  Mrv0541 05061312052D          

 18 21  0  0  0  0            999 V2000
   -0.8430   -2.6304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1281   -2.2187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5570   -2.2170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8411   -0.1554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3018   -1.3929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1714    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1286    0.2571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5839   -0.9804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0143   -0.9804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8411   -0.9804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5839   -0.1554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3018    0.2571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0143   -0.1554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9964    1.1143    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1271   -1.3937    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7290   -1.3924    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7290    0.2567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5560   -1.3920    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  7  4  1  0  0  0  0
  7  6  2  0  0  0  0
  8  5  2  0  0  0  0
  9  5  1  0  0  0  0
 10  4  1  0  0  0  0
 11  7  1  0  0  0  0
 11  8  1  0  0  0  0
 12 11  2  0  0  0  0
 13  9  1  0  0  0  0
 13 12  1  0  0  0  0
 14  6  1  0  0  0  0
 14 12  1  0  0  0  0
 15  2  1  0  0  0  0
 15  8  1  0  0  0  0
 15 10  1  0  0  0  0
 16  9  2  0  0  0  0
 17 13  2  0  0  0  0
 18  3  1  0  0  0  0
 18 10  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0277727

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O=C1C=C2N3CCCOC3CC3=CNC(=C23)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C13H12N2O3/c16-9-5-8-11-7(6-14-12(11)13(9)17)4-10-15(8)2-1-3-18-10/h5-6,10,14H,1-4H2

> <INCHI_KEY>
GTVMGUBGOSWMOJ-UHFFFAOYSA-N

> <FORMULA>
C13H12N2O3

> <MOLECULAR_WEIGHT>
244.246

> <EXACT_MASS>
244.08479226

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
24.605807621556167

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione

> <ALOGPS_LOGP>
1.21

> <JCHEM_LOGP>
0.6096093160000003

> <ALOGPS_LOGS>
-1.48

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.36165390561407

> <JCHEM_PKA_STRONGEST_BASIC>
1.544867694330394

> <JCHEM_POLAR_SURFACE_AREA>
62.400000000000006

> <JCHEM_REFRACTIVITY>
66.51790000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.04e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -1.574  -4.910   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.239  -4.142   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.906  -4.138   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.570  -0.290   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.430  -2.600   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.320   2.080   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.240   0.480   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.090  -1.830   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.760  -1.830   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.570  -1.830   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.090  -0.290   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.430   0.480   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.760  -0.290   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       1.860   2.080   0.000  0.00  0.00           N+0
HETATM   15  N   UNK     0      -0.237  -2.602   0.000  0.00  0.00           N+0
HETATM   16  O   UNK     0       5.094  -2.599   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       5.094   0.479   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      -2.905  -2.598   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1   15                                                       
CONECT    3    1   18                                                       
CONECT    4    7   10                                                       
CONECT    5    8    9                                                       
CONECT    6    7   14                                                       
CONECT    7    4    6   11                                                  
CONECT    8    5   11   15                                                  
CONECT    9    5   13   16                                                  
CONECT   10    4   15   18                                                  
CONECT   11    7    8   12                                                  
CONECT   12   11   13   14                                                  
CONECT   13    9   12   17                                                  
CONECT   14    6   12                                                       
CONECT   15    2    8   10                                                  
CONECT   16    9                                                            
CONECT   17   13                                                            
CONECT   18    3   10                                                       
MASTER        0    0    0    0    0    0    0    0   18    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₂N₂O₃

Average Mass

244.2460 Da

Monoisotopic Mass

244.08479 Da

IUPAC Name

6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione

Traditional Name

6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione

CAS Registry Number

Not Available

SMILES

O=C1C=C2N3CCCOC3CC3=CNC(=C23)C1=O

InChI Identifier

InChI=1S/C13H12N2O3/c16-9-5-8-11-7(6-14-12(11)13(9)17)4-10-15(8)2-1-3-18-10/h5-6,10,14H,1-4H2

InChI Key

GTVMGUBGOSWMOJ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Mycena haematopus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrrolo[4,3,2-de]quinolines. These are organic heterocyclic compounds with a structure based on the Pyrrolo[4,3,2-de]quinoline skeleton.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Quinolines and derivatives

Sub Class

Pyrroloquinolines

Direct Parent

Pyrrolo[4,3,2-de]quinolines

Alternative Parents

Substituents

Pyrrolo[4,3,2-de]quinoline
Indole or derivatives
Aryl ketone
1,3-oxazinane
Oxazinane
Pyrrole
Heteroaromatic compound
Vinylogous amide
Ketone
Cyclic ketone
Enamine
Oxacycle
Azacycle
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Organic oxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.21	ALOGPS
logP	0.61	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	13.36	ChemAxon
pKa (Strongest Basic)	1.54	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	62.4 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	66.52 m³·mol⁻¹	ChemAxon
Polarizability	24.61 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0040734

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB020544

KNApSAcK ID

Not Available

Chemspider ID

9033000

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Haematopodin

METLIN ID

Not Available

PubChem Compound

10857709

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione (NP0277727)

MOL for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

3D MOL for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

3D SDF for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

3D-SDF for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

PDB for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

3D PDB for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

SMILES for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

INCHI for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

Structure for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)

3D Structure for NP0277727 (6-oxa-2,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(15),9,12(16)-triene-13,14-dione)