NP-MRD: Showing NP-Card for 11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one (NP0277416)

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Record Information

Version

2.0

Created at

2022-09-09 02:02:57 UTC

Updated at

2022-09-09 02:02:57 UTC

NP-MRD ID

NP0277416

Secondary Accession Numbers

None

Natural Product Identification

Common Name

11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one

Description

11-Acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]Trideca-2,4-dien-6-one belongs to the class of organic compounds known as cytisine and derivatives. These are lupin alkaloids with a structure based on the cytisine skeleton, which is a tetracyclic ketone containing fused pyridine and piperidine rings that form pyrido[1,2a][1,5]diazocin-8-one. 11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one is found in Anarthrophyllum elegans, Baptisia australis, Dermatophyllum secundiflorum, Dicraeopetalum stipulare, Genista acanthoclada, Genista albida, Genista lobelii, Lamprolobium grandiflorum, Lupinus pusillus, Petteria ramentacea, Plagiocarpus axillaris, Platycelyphium voense, Retama monosperma, Sophora secundiflora, Sophora tomentosa, Spartium junceum, Teline maderensis and Ulex europaeus. 11-Acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]Trideca-2,4-dien-6-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 33 35  0  0  0  0  0  0  0  0999 V2000
    4.3074   -0.1340   -0.3595 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1987    0.7064    0.2083 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4521    1.7394    0.8629 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8601    0.3134   -0.0074 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7765    1.0969    0.5232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1705    0.2783    1.3734 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1241   -1.2183    1.2246 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2316   -1.5103   -0.2340 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5059   -0.8807   -0.7624 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9731   -1.0732   -1.0099 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8454   -0.1946   -0.3020 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5364    0.4698    0.8180 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3963    1.3124    1.4829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6749    1.5041    0.9807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9975    0.8223   -0.1721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0931   -0.0077   -0.7923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4450   -0.6045   -1.8433 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5427   -0.9141    0.3845 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2046    0.5236   -0.4777 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9649   -0.5379   -1.3303 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2553    1.5873   -0.3365 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1730    1.9238    1.1758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1481    0.5764    2.4347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7502   -1.7670    1.6341 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0315   -1.5116    1.7487 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3832   -2.6241   -0.3477 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3670   -0.6176   -1.8215 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3696   -1.5905   -0.6120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5710   -1.9918   -1.2775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6162   -0.6646   -1.9806 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1347    1.8470    2.3920 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3830    2.1572    1.4709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0129    0.9843   -0.5573 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  6 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 16 11  1  0
 11 10  1  0
  5  4  1  0
 11 12  1  0
 10  8  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  9 27  1  0
  9 28  1  0
  8 26  1  1
  7 24  1  0
  7 25  1  0
  6 23  1  1
  5 21  1  0
  5 22  1  0
 13 31  1  0
 14 32  1  0
 15 33  1  0
 10 29  1  0
 10 30  1  0
M  END


  Mrv1533004161503162D          

 17 19  0  0  0  0            999 V2000
    6.3325    1.7463    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7229    1.1904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8995    0.3845    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9367    1.4403    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.8667    2.2624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2360    2.7942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1662    1.6853    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5828    0.7397    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4049    0.8096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9521    1.2715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2752    0.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5283    1.1503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4584    1.9723    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1353    2.4439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0654    3.2659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8822    2.0935    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4140    2.7242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  4  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 10 16  1  0  0  0  0
 16 17  1  0  0  0  0
  6 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0277416

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)N1CC2CC(C1)C1=CC=CC(=O)N1C2

> <INCHI_IDENTIFIER>
InChI=1S/C13H16N2O2/c1-9(16)14-6-10-5-11(8-14)12-3-2-4-13(17)15(12)7-10/h2-4,10-11H,5-8H2,1H3

> <INCHI_KEY>
WCRIKJOQMRFVPX-UHFFFAOYSA-N

> <FORMULA>
C13H16N2O2

> <MOLECULAR_WEIGHT>
232.283

> <EXACT_MASS>
232.121177763

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
23.95208867778149

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one

> <ALOGPS_LOGP>
1.05

> <JCHEM_LOGP>
-0.6699113320000002

> <ALOGPS_LOGS>
-0.89

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.882030736514359

> <JCHEM_POLAR_SURFACE_AREA>
40.620000000000005

> <JCHEM_REFRACTIVITY>
66.4942

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.98e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0      11.821   3.260   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.683   2.222   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      11.012   0.718   0.000  0.00  0.00           O+0
HETATM    4  N   UNK     0       9.215   2.689   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       9.085   4.223   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.907   5.216   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.777   3.146   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.688   1.381   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.222   1.511   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.511   2.373   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.247   1.493   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.853   2.147   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.722   3.682   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.986   4.562   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       3.855   6.096   0.000  0.00  0.00           O+0
HETATM   16  N   UNK     0       5.380   3.908   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       6.373   5.085   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   17                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8    4                                                       
CONECT   10    8   11   16                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   10   17                                                  
CONECT   17   16    6                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₆N₂O₂

Average Mass

232.2830 Da

Monoisotopic Mass

232.12118 Da

IUPAC Name

11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one

Traditional Name

11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one

CAS Registry Number

Not Available

SMILES

CC(=O)N1CC2CC(C1)C1=CC=CC(=O)N1C2

InChI Identifier

InChI=1S/C13H16N2O2/c1-9(16)14-6-10-5-11(8-14)12-3-2-4-13(17)15(12)7-10/h2-4,10-11H,5-8H2,1H3

InChI Key

WCRIKJOQMRFVPX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anarthrophyllum elegans	LOTUS Database	35616633
Baptisia australis	LOTUS Database	35616633
Dermatophyllum secundiflorum	LOTUS Database	35616633
Dicraeopetalum stipulare	LOTUS Database	35616633
Genista acanthoclada	LOTUS Database	35616633
Genista albida	LOTUS Database	35616633
Genista lobelii	LOTUS Database	35616633
Lamprolobium grandiflorum	LOTUS Database	35616633
Lupinus pusillus	LOTUS Database	35616633
Petteria ramentacea	LOTUS Database	35616633
Plagiocarpus axillaris	LOTUS Database	35616633
Platycelyphium voense	LOTUS Database	35616633
Retama monosperma	LOTUS Database	35616633
Sophora secundiflora	LOTUS Database	35616633
Sophora tomentosa	LOTUS Database	35616633
Spartium junceum	LOTUS Database	35616633
Teline maderensis	LOTUS Database	35616633
Ulex europaeus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cytisine and derivatives. These are lupin alkaloids with a structure based on the cytisine skeleton, which is a tetracyclic ketone containing fused pyridine and piperidine rings that form pyrido[1,2a][1,5]diazocin-8-one.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Lupin alkaloids

Sub Class

Cytisine and derivatives

Direct Parent

Cytisine and derivatives

Alternative Parents

Substituents

Cytisine
N-acyl-piperidine
Pyridinone
Piperidine
Pyridine
Tertiary carboxylic acid amide
Acetamide
Heteroaromatic compound
Lactam
Carboxamide group
Organoheterocyclic compound
Carboxylic acid derivative
Azacycle
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.05	ALOGPS
logP	-0.67	ChemAxon
logS	-0.89	ALOGPS
pKa (Strongest Basic)	-0.88	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	40.62 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	66.49 m³·mol⁻¹	ChemAxon
Polarizability	23.95 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3716901

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one (NP0277416)

MOL for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

3D MOL for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

3D SDF for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

3D-SDF for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

PDB for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

3D PDB for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

SMILES for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

INCHI for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

Structure for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)

3D Structure for NP0277416 (11-acetyl-7,11-diazatricyclo[7.3.1.0²,⁷]trideca-2,4-dien-6-one)