NP-MRD: Showing NP-Card for 2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0276590)

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Record Information

Version

2.0

Created at

2022-09-09 00:48:23 UTC

Updated at

2022-09-09 00:48:23 UTC

NP-MRD ID

NP0276590

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Description

2-{[14-Hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]Octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol belongs to the class of organic compounds known as cucurbitacin glycosides. These are polycyclic compounds containing a carbohydrate derivative glycosidically linked to a curcubitane nucleus. 2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol is found in Thalictrum minus. 2-{[14-Hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]Octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004241508072D          

 54 60  0  0  0  0            999 V2000
    5.6974    3.6196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0083    2.8554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8256    2.7425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1365    1.9784    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3319    3.3939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1492    3.2810    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4601    2.5168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2773    2.4040    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9537    1.8655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5020    2.2041    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7313    1.4116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5072    1.1313    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0484    0.9486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3971    1.4549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1995    0.6540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5850    1.3097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3047    0.5338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4926    0.3886    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9608    1.0193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1486    0.8741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4327    0.0995    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4352    0.4599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4372   -0.3651    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2763   -0.7794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2743   -1.6044    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9878   -2.0186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9858   -2.8436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2704   -3.2544    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7033   -1.6078    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4168   -2.0220    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7053   -0.7828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4207   -0.3720    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9918   -0.3686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9938    0.4564    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6168    1.5048    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8971    2.2807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7092    2.4259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2411    1.7952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5214    2.5711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0532    1.9404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3335    2.7164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1456    2.8616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6774    2.2309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0373    2.9732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1953    1.3596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7271    1.9903    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5392    1.8451    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0711    2.4758    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7908    3.2517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3226    3.8824    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9786    3.3969    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6983    4.1728    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4468    2.7662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3653    2.9114    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 24 33  1  0  0  0  0
 33 34  1  0  0  0  0
 20 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 19 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 16 40  1  0  0  0  0
 38 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 10 43  1  0  0  0  0
 14 43  1  0  0  0  0
 43 44  1  0  0  0  0
 35 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 51  1  0  0  0  0
 51 52  1  0  0  0  0
 51 53  1  0  0  0  0
 46 53  1  0  0  0  0
 53 54  1  0  0  0  0
M  END

     RDKit          3D

122128  0  0  0  0  0  0  0  0999 V2000
   10.2075    0.8082    0.5584 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0768   -0.2921   -0.4163 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2808   -0.9015   -1.0227 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8976   -0.7517   -0.7653 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6163   -0.1874   -0.1955 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8549   -1.2435    0.5073 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.6183   -2.3158   -0.3406 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5456   -0.8143    1.1294 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7211    0.3466    2.0237 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4344   -0.8641    0.1721 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3247    0.2077   -0.8325 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7285   -0.2818   -2.0948 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8281    0.5668   -0.9215 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1932   -0.7644   -0.4751 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3766   -1.7283   -1.6187 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7298   -0.6147   -0.2458 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2621    0.4877   -1.1741 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2007    0.7809   -1.0441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8742    0.0219    0.0490 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2872    0.5464    0.1684 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7838    0.8055   -1.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1802   -0.3404    0.9439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4214   -1.6111    0.6062 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1497   -1.8710   -0.4986 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3398   -2.6068   -1.3793 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7012   -3.6512   -0.7114 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0897   -4.6379   -1.6695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0416   -5.2157   -2.5081 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6759   -4.3302    0.2410 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3169   -5.6571    0.3352 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0928   -4.1258   -0.2144 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.9165   -4.8121    0.6822 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4278   -2.6666   -0.1654 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.4157   -2.3279   -1.0656 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2997    1.9132    0.8505 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3335    2.9558   -0.0795 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4343    3.7760    0.0584 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9959    5.0180    0.5735 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1215    5.6985    1.0139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8808    6.1905   -0.2210 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6693    7.5567   -0.3994 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4233    5.4637   -1.4523 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2145    5.9907   -1.9289 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2191    3.9824   -1.1935 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4562    3.3546   -1.0561 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1547    2.1721    1.7541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5080    0.9632    2.3416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1130   -0.0495    1.3195 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6784   -1.3731    1.8297 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3152   -0.3958    1.1741 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3058    0.3042    2.0101 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7308   -0.1129    1.8297 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0383   -1.0426    0.7233 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8327   -2.4589    1.2422 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2499    1.0903    0.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6753    1.7017    0.1551 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7752    0.4880    1.5331 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6269   -1.8050   -0.5013 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1083   -0.1420   -0.9846 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1223   -1.0984   -2.1155 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7664   -1.5566   -1.4769 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9255    0.6598    0.4536 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1173    0.2830   -1.0584 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5377   -1.6651    1.3101 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8068   -2.0914   -1.2938 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3332   -1.6912    1.8609 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8413    0.3663    2.2823 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5809    1.3501    1.5705 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2453    0.3258    2.9998 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5889   -1.8347   -0.4377 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9028    1.1117   -0.6447 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1241    0.4211   -2.6362 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6658    1.3461   -0.1785 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6052    0.8086   -1.9569 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0389   -2.5683   -1.4323 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6837   -1.2328   -2.5736 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3861   -2.2119   -1.8997 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2243   -1.5426   -0.5855 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5126    0.1526   -2.2019 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8153    1.4383   -1.0269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3875    1.8629   -0.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6937    0.5031   -2.0084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9900   -1.0331   -0.3426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8375    1.1380   -1.1690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2641    1.7319   -1.6474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6977   -0.0179   -1.9264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9450   -0.3019    2.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2116    0.1913    0.8796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5286   -0.9735   -1.0021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8953   -3.2173   -0.1007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5986   -5.4763   -1.1372 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3221   -4.1484   -2.2749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5320   -5.9497   -2.0810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5579   -3.8471    1.2272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1378   -6.1622    0.5812 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.7954   -4.3276    0.6773 H   0  0  0  0  0  0  0  0  0  0  0  0
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 31 96  1  6
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 33 98  1  1
 34 99  1  0
M  END


  Mrv1533004241508072D          

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 53 54  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0276590

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C(O)CC=C(C)C)C1C(O)CC2(C)C3CCC4C5(CC35CCC12C)CCC(OC1OCC(O)C(O)C1O)C4(C)COC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C41H68O13/c1-20(2)7-8-22(43)21(3)29-23(44)15-39(6)27-10-9-26-37(4,19-52-36-34(50)32(48)31(47)25(16-42)53-36)28(54-35-33(49)30(46)24(45)17-51-35)11-12-40(26)18-41(27,40)14-13-38(29,39)5/h7,21-36,42-50H,8-19H2,1-6H3

> <INCHI_KEY>
DQRIDXWUXLELEC-UHFFFAOYSA-N

> <FORMULA>
C41H68O13

> <MOLECULAR_WEIGHT>
768.982

> <EXACT_MASS>
768.46599225

> <JCHEM_ACCEPTOR_COUNT>
13

> <JCHEM_ATOM_COUNT>
122

> <JCHEM_AVERAGE_POLARIZABILITY>
86.11411619108628

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
0.84

> <JCHEM_LOGP>
0.7380252793333318

> <ALOGPS_LOGS>
-3.73

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.458663626881023

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.926744781199483

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8486133234394178

> <JCHEM_POLAR_SURFACE_AREA>
218.98999999999995

> <JCHEM_REFRACTIVITY>
195.857

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.42e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0      10.635   6.757   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.216   5.330   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.741   5.119   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      13.321   3.693   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      13.686   6.335   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      15.212   6.125   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      15.792   4.698   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      17.318   4.487   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.847   3.482   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.270   4.114   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.698   2.635   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      12.147   2.112   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       9.424   1.771   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.208   2.716   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.839   1.221   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.692   2.445   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.169   0.996   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.653   0.725   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.660   1.903   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.144   1.632   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.674   0.186   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.812   0.858   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       0.816  -0.682   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -0.516  -1.455   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -0.512  -2.995   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -1.844  -3.768   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.840  -5.308   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -0.505  -6.075   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -3.179  -3.001   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -4.511  -3.774   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -3.183  -1.461   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -4.519  -0.694   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      -1.851  -0.688   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -1.855   0.852   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       1.151   2.809   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       1.675   4.257   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       3.191   4.528   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       4.183   3.351   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       4.707   4.799   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.699   3.622   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.222   5.071   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       7.738   5.342   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       8.731   4.164   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       9.403   5.550   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      -0.365   2.538   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      -1.357   3.715   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      -2.873   3.444   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      -3.866   4.621   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -3.343   6.070   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      -4.335   7.247   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      -1.827   6.341   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      -1.304   7.789   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      -0.834   5.164   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0       0.682   5.435   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    2   11   43                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16   43                                             
CONECT   15   14                                                            
CONECT   16   14   17   40                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   38                                                  
CONECT   20   19   21   22   35                                             
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   33                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   24   34                                                  
CONECT   34   33                                                            
CONECT   35   20   36   45                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   19   39   40                                             
CONECT   39   38   40                                                       
CONECT   40   39   16   38   41                                             
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   10   14   44                                             
CONECT   44   43                                                            
CONECT   45   35   46                                                       
CONECT   46   45   47   53                                                  
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51   46   54                                                  
CONECT   54   53                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  120    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₁H₆₈O₁₃

Average Mass

768.9820 Da

Monoisotopic Mass

768.46599 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C(O)CC=C(C)C)C1C(O)CC2(C)C3CCC4C5(CC35CCC12C)CCC(OC1OCC(O)C(O)C1O)C4(C)COC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1S/C41H68O13/c1-20(2)7-8-22(43)21(3)29-23(44)15-39(6)27-10-9-26-37(4,19-52-36-34(50)32(48)31(47)25(16-42)53-36)28(54-35-33(49)30(46)24(45)17-51-35)11-12-40(26)18-41(27,40)14-13-38(29,39)5/h7,21-36,42-50H,8-19H2,1-6H3

InChI Key

DQRIDXWUXLELEC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Thalictrum minus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cucurbitacin glycosides. These are polycyclic compounds containing a carbohydrate derivative glycosidically linked to a curcubitane nucleus.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Cucurbitacin glycosides

Alternative Parents

Substituents

Cucurbitacin glycoside skeleton
Triterpene saponin
Triterpene glycoside
Cycloartanol-skeleton
9b,19-cyclo-lanostane-skeleton
Cycloartane-skeleton
Triterpenoid
Dihydroxy bile acid, alcohol, or derivatives
Hydroxy bile acid, alcohol, or derivatives
Bile acid, alcohol, or derivatives
22-hydroxysteroid
16-hydroxysteroid
Hydroxysteroid
Glycosyl compound
O-glycosyl compound
Oxane
Monosaccharide
Cyclic alcohol
Secondary alcohol
Polyol
Acetal
Oxacycle
Organoheterocyclic compound
Primary alcohol
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.84	ALOGPS
logP	0.74	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	11.93	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	13	ChemAxon
Hydrogen Donor Count	9	ChemAxon
Polar Surface Area	218.99 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	195.86 m³·mol⁻¹	ChemAxon
Polarizability	86.11 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0276590)

MOL for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D MOL for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D SDF for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D-SDF for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

PDB for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D PDB for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

SMILES for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

INCHI for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

Structure for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D Structure for NP0276590 (2-{[14-hydroxy-15-(3-hydroxy-6-methylhept-5-en-2-yl)-7,12,16-trimethyl-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-7-yl]methoxy}-6-(hydroxymethyl)oxane-3,4,5-triol)