NP-MRD: Showing NP-Card for [2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid (NP0276586)

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Record Information

Version

1.0

Created at

2022-09-09 00:48:05 UTC

Updated at

2022-09-09 00:48:05 UTC

NP-MRD ID

NP0276586

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid

Description

2-[2-Hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid belongs to the class of organic compounds known as 2(hydroxyphenyl)acetic acids. These are phenylacetic acids that carry a hydroxyl group at the 2-position. [2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid is found in Tagetes filifolia. It was first documented in 2017 (PMID: 28932450). Based on a literature review very few articles have been published on 2-[2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid (PMID: 28775856).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 30  0  0  0  0  0  0  0  0999 V2000
    4.2004   -0.0056   -0.2836 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1782   -0.7488    0.0959 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3150   -0.2550    1.1978 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9095   -0.0670    0.7458 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0261   -1.0759    0.7762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3359   -0.8719    0.3417 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2927   -2.0065    0.3950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4602   -2.5679   -0.9902 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8368   -2.0823   -1.9447 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3335   -3.6351   -1.1239 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6901    0.3741   -0.1274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9924    0.6163   -0.5708 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7651    1.4068   -0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1574    2.6452   -0.6470 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2295    3.7089   -0.6959 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5136    1.1804    0.2641 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4151    0.9483    0.1925 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8884   -0.2844   -1.0828 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0084   -1.6920   -0.4090 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7049    0.6864    1.6046 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3348   -0.9813    2.0643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2957   -2.0237    1.1507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8676   -2.8261    1.0107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2665   -1.6860    0.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5502   -4.2296   -0.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2505    1.5179   -0.9107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7487    4.6659   -0.8906 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3527    3.8181    0.2470 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4284    3.5161   -1.5541 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2581    1.9548    0.2494 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 14  1  0
 14 13  1  0
 13 16  2  0
 16  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8 10  1  0
  8  9  2  0
  6 11  2  0
 11 12  1  0
 11 13  1  0
 15 27  1  0
 15 28  1  0
 15 29  1  0
 16 30  1  0
  3 20  1  0
  3 21  1  0
  2 19  1  0
  1 17  1  0
  1 18  1  0
  5 22  1  0
  7 23  1  0
  7 24  1  0
 10 25  1  0
 12 26  1  0
M  END


  Mrv1652309092202482D          

 16 16  0  0  0  0            999 V2000
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  6 11  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  2  0  0  0  0
  4 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0276586

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(CC=C)=CC(CC(O)=O)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C12H14O4/c1-3-4-8-5-9(7-11(13)14)12(15)10(6-8)16-2/h3,5-6,15H,1,4,7H2,2H3,(H,13,14)

> <INCHI_KEY>
JZSDZJLCXPUULK-UHFFFAOYSA-N

> <FORMULA>
C12H14O4

> <MOLECULAR_WEIGHT>
222.24

> <EXACT_MASS>
222.089208931

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
22.760546182369673

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid

> <JCHEM_LOGP>
2.248328251

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.795360303450728

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.991127420649421

> <JCHEM_PKA_STRONGEST_BASIC>
-4.894170995328754

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
60.09700000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   16                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    6   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13    4                                                       
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Value	Source
2-[2-Hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetate	Generator

Chemical Formula

C₁₂H₁₄O₄

Average Mass

222.2400 Da

Monoisotopic Mass

222.08921 Da

IUPAC Name

2-[2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid

Traditional Name

[2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid

CAS Registry Number

Not Available

SMILES

COC1=CC(CC=C)=CC(CC(O)=O)=C1O

InChI Identifier

InChI=1S/C12H14O4/c1-3-4-8-5-9(7-11(13)14)12(15)10(6-8)16-2/h3,5-6,15H,1,4,7H2,2H3,(H,13,14)

InChI Key

JZSDZJLCXPUULK-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Tagetes filifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2(hydroxyphenyl)acetic acids. These are phenylacetic acids that carry a hydroxyl group at the 2-position.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Phenylacetic acids

Direct Parent

2(hydroxyphenyl)acetic acids

Alternative Parents

Substituents

2(hydroxyphenyl)acetic acid
Methoxyphenol
Phenoxy compound
Methoxybenzene
Phenol ether
Anisole
Phenol
Alkyl aryl ether
Monocarboxylic acid or derivatives
Ether
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.25	ChemAxon
pKa (Strongest Acidic)	3.99	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	60.1 m³·mol⁻¹	ChemAxon
Polarizability	22.76 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

129640791

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Putra OD, Umeda D, Fukuzawa K, Gunji M, Yonemochi E: A new solvate of epalerstat, a drug for diabetic neuropathy. Acta Crystallogr E Crystallogr Commun. 2017 Jul 28;73(Pt 8):1264-1267. doi: 10.1107/S2056989017010751. eCollection 2017 Jul 1. [PubMed:28932450 ]
Umeda D, Putra OD, Gunji M, Fukuzawa K, Yonemochi E: Epalrestat tetra-hydro-furan monosolvate: crystal structure and phase transition. Acta Crystallogr E Crystallogr Commun. 2017 Jun 2;73(Pt 7):941-944. doi: 10.1107/S2056989017007976. eCollection 2017 Jul 1. [PubMed:28775856 ]
LOTUS database [Link]

Showing NP-Card for [2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid (NP0276586)

MOL for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

3D MOL for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

3D SDF for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

3D-SDF for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

PDB for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

3D PDB for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

SMILES for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

INCHI for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

Structure for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)

3D Structure for NP0276586 ([2-hydroxy-3-methoxy-5-(prop-2-en-1-yl)phenyl]acetic acid)