NP-MRD: Showing NP-Card for methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate (NP0276511)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-09 00:41:17 UTC

Updated at

2022-09-09 00:41:18 UTC

NP-MRD ID

NP0276511

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate

Description

(+)-Minovincinine belongs to the class of organic compounds known as aspidospermatan-type alkaloids. These are tryptophan-derived alkaloids that are derived from the fusion of tryptamine and a terpene unit (generally either 9 or 10 carbons). Aspidospermine and aspidospermidine (along with tabersonine) are the archetypical members of the Aspidosperma alkaloids (+)-minovincinine is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate is found in Alstonia venenata and Tabernaemontana corymbosa. methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate was first documented in 2019 (PMID: 31009114). Based on a literature review very few articles have been published on (+)-minovincinine (PMID: 35660549).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092202412D          

 26 30  0  0  1  0            999 V2000
    2.0785    5.7235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9486    4.9088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5892    4.3890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3597    4.6838    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4593    3.5743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0999    3.0544    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9149    3.1826    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2886    2.4471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0853    2.2327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2980    1.4356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7140    0.8529    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9173    1.0673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7047    1.8644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9700    2.2397    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4885    1.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0384    0.9066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0695    1.1301    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2990    0.8353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6584    1.3552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7883    2.1699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5589    2.4647    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9183    2.9846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0482    3.7993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1477    2.6897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6888    3.2794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1995    1.9448    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  8 13  1  0  0  0  0
 14 13  1  1  0  0  0
  6 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 22 23  1  0  0  0  0
 22 24  1  1  0  0  0
 21 25  1  0  0  0  0
  5 25  1  0  0  0  0
 21 26  1  0  0  0  0
 26 17  1  6  0  0  0
 14 26  1  0  0  0  0
M  END

     RDKit          3D

 52 56  0  0  0  0  0  0  0  0999 V2000
    1.8951    5.1054    0.3911 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2202    3.9237    0.0523 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7233    2.6661    0.2623 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8526    2.5642    0.7878 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0100    1.4529   -0.0951 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5136    0.2583    0.1158 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7407   -0.1474    0.6840 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6580   -1.5875    0.8306 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5694   -2.4560    1.4129 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2785   -3.8006    1.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0445   -4.2381    1.0703 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1361   -3.3734    0.4885 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4361   -2.0273    0.3595 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7235   -0.9121   -0.2695 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6973   -1.1809   -1.7526 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5798   -1.9777   -1.9113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3082   -1.8349   -0.7112 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7043   -1.8810   -0.7652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4151   -0.5750   -0.7828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4377    0.5039   -1.1623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3074    0.5705   -0.1563 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8010    1.0684    1.1917 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3997    2.4076    1.1940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6653    1.0760    2.0316 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3644    1.6193   -0.6914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7202   -0.7822    0.0736 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4333    5.9284   -0.2240 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9617    4.9665    0.1428 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8260    5.3418    1.4724 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5846    0.4052    0.9692 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5244   -2.1109    1.7779 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9884   -4.4808    1.9978 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8056   -5.2942    1.1698 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2078   -3.8164    0.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7826   -0.3134   -2.3955 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5846   -1.8322   -2.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3525   -3.0780   -2.0435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1196   -1.7183   -2.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0121   -2.5165   -1.6358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0829   -2.4517    0.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2251   -0.5973   -1.5278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8345   -0.2933    0.2110 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9933    0.3935   -2.1552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0193    1.4500   -1.1958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4513    0.2562    1.6062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3037    2.3905    1.8719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7218    3.1651    1.6875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7108    2.8429    0.2547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7521    1.7472    2.7529 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3210    1.6857   -1.7894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7816    2.6125   -0.3598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8133   -1.1245    1.1490 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  6
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 21 20  1  6
 21 25  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 21 26  1  0
 25  5  1  0
 14  6  1  0
 26 14  1  0
 13  8  1  0
 26 17  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  7 30  1  0
  9 31  1  0
 10 32  1  0
 11 33  1  0
 12 34  1  0
 15 35  1  0
 15 36  1  0
 16 37  1  0
 16 38  1  0
 18 39  1  0
 18 40  1  0
 19 41  1  0
 19 42  1  0
 20 43  1  0
 20 44  1  0
 25 50  1  0
 25 51  1  0
 22 45  1  1
 23 46  1  0
 23 47  1  0
 23 48  1  0
 24 49  1  0
 26 52  1  1
M  END


  Mrv1652309092202412D          

 26 30  0  0  1  0            999 V2000
    2.0785    5.7235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9486    4.9088    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5892    4.3890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3597    4.6838    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4593    3.5743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0999    3.0544    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9149    3.1826    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2886    2.4471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0853    2.2327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2980    1.4356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7140    0.8529    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9173    1.0673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7047    1.8644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9700    2.2397    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4885    1.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0384    0.9066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0695    1.1301    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2990    0.8353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6584    1.3552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7883    2.1699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5589    2.4647    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9183    2.9846    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0482    3.7993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1477    2.6897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6888    3.2794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1995    1.9448    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  8 13  1  0  0  0  0
 14 13  1  1  0  0  0
  6 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 22 23  1  0  0  0  0
 22 24  1  1  0  0  0
 21 25  1  0  0  0  0
  5 25  1  0  0  0  0
 21 26  1  0  0  0  0
 26 17  1  6  0  0  0
 14 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0276511

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=C2NC3=CC=CC=C3[C@]22CCN3CCC[C@@](C1)([C@H](C)O)[C@H]23

> <INCHI_IDENTIFIER>
InChI=1S/C21H26N2O3/c1-13(24)20-8-5-10-23-11-9-21(19(20)23)15-6-3-4-7-16(15)22-17(21)14(12-20)18(25)26-2/h3-4,6-7,13,19,22,24H,5,8-12H2,1-2H3/t13-,19+,20+,21+/m0/s1

> <INCHI_KEY>
BKMGDPNQILJWLI-ODVVLEEXSA-N

> <FORMULA>
C21H26N2O3

> <MOLECULAR_WEIGHT>
354.45

> <EXACT_MASS>
354.194342705

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
39.024695791584065

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1S,12S,19S)-12-[(1S)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2,4,6,9-tetraene-10-carboxylate

> <JCHEM_LOGP>
1.4850668756666656

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
14.988687440986116

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.01301467626272

> <JCHEM_PKA_STRONGEST_BASIC>
9.78481707448754

> <JCHEM_POLAR_SURFACE_AREA>
61.8

> <JCHEM_REFRACTIVITY>
101.8777

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1S,12S,19S)-12-[(1S)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2,4,6,9-tetraene-10-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       3.880  10.684   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       3.637   9.163   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       4.833   8.193   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       6.271   8.743   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.591   6.672   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.786   5.702   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       7.308   5.941   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       8.005   4.568   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.493   4.168   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.890   2.680   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.799   1.592   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.312   1.992   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.915   3.480   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.544   4.181   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.512   2.983   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.672   1.692   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       3.863   2.110   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0       2.425   1.559   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.229   2.530   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.472   4.050   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.910   4.601   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.714   5.571   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.957   7.092   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       0.276   5.021   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       3.152   6.122   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.106   3.630   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   25                                                  
CONECT    6    5    7   14                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    8   14                                                  
CONECT   14   13    6   15   26                                             
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   26                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   25   26                                             
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   21    5                                                       
CONECT   26   21   17   14                                                  
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

View in JSmol

Synonyms

Value	Source
19S-Hydroxy-(+)-vincadifformine	ChEBI

Chemical Formula

C₂₁H₂₆N₂O₃

Average Mass

354.4500 Da

Monoisotopic Mass

354.19434 Da

IUPAC Name

methyl (1S,12S,19S)-12-[(1S)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2,4,6,9-tetraene-10-carboxylate

Traditional Name

methyl (1S,12S,19S)-12-[(1S)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2,4,6,9-tetraene-10-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C2NC3=CC=CC=C3[C@]22CCN3CCC[C@@](C1)([C@H](C)O)[C@H]23

InChI Identifier

InChI=1S/C21H26N2O3/c1-13(24)20-8-5-10-23-11-9-21(19(20)23)15-6-3-4-7-16(15)22-17(21)14(12-20)18(25)26-2/h3-4,6-7,13,19,22,24H,5,8-12H2,1-2H3/t13-,19+,20+,21+/m0/s1

InChI Key

BKMGDPNQILJWLI-ODVVLEEXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Alstonia venenata	LOTUS Database	35616633
Tabernaemontana corymbosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aspidospermatan-type alkaloids. These are tryptophan-derived alkaloids that are derived from the fusion of tryptamine and a terpene unit (generally either 9 or 10 carbons). Aspidospermine and aspidospermidine (along with tabersonine) are the archetypical members of the Aspidosperma alkaloids.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Aspidospermatan-type alkaloids

Sub Class

Not Available

Direct Parent

Aspidospermatan-type alkaloids

Alternative Parents

Substituents

Aspidosperma alkaloid
Plumeran-type alkaloid
Carbazole
Indole or derivatives
Dihydroindole
Indolizidine
Aralkylamine
Secondary aliphatic/aromatic amine
Piperidine
Benzenoid
N-alkylpyrrolidine
1,3-aminoalcohol
Pyrrolidine
Vinylogous amide
Methyl ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Amino acid or derivatives
Secondary alcohol
Tertiary aliphatic amine
Tertiary amine
Carboxylic acid ester
Organoheterocyclic compound
Azacycle
Secondary amine
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Enamine
Organic nitrogen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Alcohol
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.49	ChemAxon
pKa (Strongest Acidic)	14.01	ChemAxon
pKa (Strongest Basic)	9.78	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	61.8 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	101.88 m³·mol⁻¹	ChemAxon
Polarizability	39.02 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00024459

Chemspider ID

88294055

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

138911112

PDB ID

Not Available

ChEBI ID

145195

Good Scents ID

Not Available

References

General References

Williams D, Qu Y, Simionescu R, De Luca V: The assembly of (+)-vincadifformine- and (-)-tabersonine-derived monoterpenoid indole alkaloids in Catharanthus roseus involves separate branch pathways. Plant J. 2019 Aug;99(4):626-636. doi: 10.1111/tpj.14346. Epub 2019 May 21. [PubMed:31009114 ]
Williams D, Brzezinski W, Gordon H, De Luca V: Site directed mutagenesis of Catharanthus roseus (+)-vincadifformine 19-hydroxylase (CYP71BY3) results in two distinct enzymatic functions. Phytochemistry. 2022 Sep;201:113265. doi: 10.1016/j.phytochem.2022.113265. Epub 2022 Jun 2. [PubMed:35660549 ]
LOTUS database [Link]

Showing NP-Card for methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate (NP0276511)

MOL for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

3D MOL for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

3D SDF for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

3D-SDF for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

PDB for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

3D PDB for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

SMILES for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

INCHI for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

Structure for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)

3D Structure for NP0276511 (methyl (1s,12s,19s)-12-[(1s)-1-hydroxyethyl]-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,9-tetraene-10-carboxylate)