NP-MRD: Showing NP-Card for [(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid (NP0276408)

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Record Information

Version

2.0

Created at

2022-09-09 00:31:19 UTC

Updated at

2022-09-09 00:31:19 UTC

NP-MRD ID

NP0276408

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid

Description

2-[(1R,2S)-3-oxo-2-[(2Z,4R)-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol. [(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid is found in Solanum tuberosum. Based on a literature review very few articles have been published on 2-[(1R,2S)-3-oxo-2-[(2Z,4R)-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092202312D          

 27 28  0  0  1  0            999 V2000
    4.8946   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801   -0.0616    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4656   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801   -1.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8476   -3.0215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6322   -2.7666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5926   -3.8062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7676   -3.8062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5127   -3.0215    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7281   -2.7666    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1150   -3.3186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3303   -3.0637    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2865   -4.1256    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    1.1759    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8946    2.0009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    2.4134    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6091    3.2384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    3.6509    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3235    2.0009    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.0380    2.4134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3235    1.1759    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0380    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    0.7634    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6091   -0.0616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  2 16  1  0  0  0  0
 17 16  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 17 26  1  0  0  0  0
 26 27  1  1  0  0  0
M  END

     RDKit          3D

 55 56  0  0  0  0  0  0  0  0999 V2000
    0.3759    3.2330   -0.2522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3140    2.3020    0.6431 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1626    2.0534    1.9709 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2444    1.3385    2.1807 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9538    0.8013    1.0315 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0391   -0.7178    1.0261 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9195   -1.2609    2.0838 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9534   -0.9300    3.2733 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8159   -2.3105    1.5391 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2751   -2.5424    0.1471 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8099   -1.1526   -0.2360 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9457   -0.2254   -0.5139 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6726   -0.6223   -1.7270 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2869   -1.5828   -2.4145 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7986    0.0783   -2.1111 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5344    1.1075   -0.0966 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8540    0.8982   -0.3987 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2498   -0.2743    0.2824 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6490   -0.2566    0.3476 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1355   -1.2832    1.3425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6453   -1.0355    2.6066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1446   -0.6124   -1.0369 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.5454   -0.4995   -0.9980 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6303    0.4096   -1.9969 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9413    0.1088   -3.3117 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1383    0.6652   -1.8494 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8540    1.7729   -2.6433 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2080    4.1772   -0.3128 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4238    2.9030   -1.3273 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3792    3.5793    0.1025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3737    2.7074    0.7401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3485    2.4450    2.8467 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6333    1.1318    3.1966 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0416    1.1006    1.2234 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7572    1.2247    0.0592 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0674   -1.2008    1.0961 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7686   -3.2478    2.1413 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8598   -1.9454    1.4333 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0372   -2.8678   -0.5605 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3642   -3.1881    0.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0909   -1.1477   -1.0608 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6249   -0.2158    0.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5898    0.8290   -0.7093 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4949    0.3754   -1.4529 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5307    1.6910   -0.0197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0303    0.7721    0.5941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2460   -1.1822    1.3941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8416   -2.2729    0.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3415   -0.8367    3.2602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8258   -1.6285   -1.3084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9060   -1.3910   -0.7424 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1253    1.3876   -1.7290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8911    0.3893   -3.4632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5407   -0.1762   -2.2459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5410    1.5085   -3.5500 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 19 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6 11  1  0
 11 12  1  0
 12 13  1  0
 13 15  1  0
 13 14  2  0
 11 10  1  0
 10  9  1  0
  9  7  1  0
  7  8  2  0
 26 17  1  0
  7  6  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  1
 17 45  1  1
 19 46  1  1
 20 47  1  0
 20 48  1  0
 21 49  1  0
 22 50  1  6
 23 51  1  0
 24 52  1  1
 25 53  1  0
 26 54  1  6
 27 55  1  0
  3 32  1  0
  4 33  1  0
  5 34  1  0
  5 35  1  0
  6 36  1  6
 11 41  1  6
 12 42  1  0
 12 43  1  0
 15 44  1  0
 10 39  1  0
 10 40  1  0
  9 37  1  0
  9 38  1  0
M  END


  Mrv1652309092202312D          

 27 28  0  0  1  0            999 V2000
    4.8946   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801   -0.0616    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4656   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801   -1.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8476   -3.0215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6322   -2.7666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5926   -3.8062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7676   -3.8062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5127   -3.0215    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7281   -2.7666    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1150   -3.3186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3303   -3.0637    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2865   -4.1256    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    1.1759    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8946    2.0009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    2.4134    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6091    3.2384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    3.6509    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3235    2.0009    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.0380    2.4134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3235    1.1759    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0380    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    0.7634    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6091   -0.0616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  2 16  1  0  0  0  0
 17 16  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 17 26  1  0  0  0  0
 26 27  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0276408

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H](O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)\C=C/C[C@H]1[C@@H](CC(O)=O)CCC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H28O9/c1-9(26-18-17(25)16(24)15(23)13(8-19)27-18)3-2-4-11-10(7-14(21)22)5-6-12(11)20/h2-3,9-11,13,15-19,23-25H,4-8H2,1H3,(H,21,22)/b3-2-/t9-,10-,11+,13-,15-,16+,17-,18-/m1/s1

> <INCHI_KEY>
LAYQBSCEPAXXNJ-JVMZRJCASA-N

> <FORMULA>
C18H28O9

> <MOLECULAR_WEIGHT>
388.413

> <EXACT_MASS>
388.173332482

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
38.62084251944789

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(1R,2S)-3-oxo-2-[(2Z,4R)-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid

> <JCHEM_LOGP>
-0.6652895649999999

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.210123389492464

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.391040602667121

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083681947342

> <JCHEM_POLAR_SURFACE_AREA>
153.75

> <JCHEM_REFRACTIVITY>
92.56230000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(1R,2S)-3-oxo-2-[(2Z,4R)-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       9.137  -0.885   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.803  -0.115   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.469  -0.885   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.469  -2.425   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.803  -3.195   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.803  -4.735   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.049  -5.640   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      10.513  -5.164   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.573  -7.105   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.033  -7.105   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.557  -5.640   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.092  -5.164   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.948  -6.195   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       2.483  -5.719   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       4.268  -7.701   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       7.803   1.425   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.137   2.195   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       9.137   3.735   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      10.470   4.505   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.470   6.045   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       9.137   6.815   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      11.804   3.735   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      13.138   4.505   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      11.804   2.195   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      13.138   1.425   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      10.470   1.425   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      10.470  -0.115   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    6   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    2   17                                                       
CONECT   17   16   18   26                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   17   27                                                  
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   56    0
END

View in JSmol

Synonyms

Value	Source
2-[(1R,2S)-3-oxo-2-[(2Z,4R)-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetate	Generator

Chemical Formula

C₁₈H₂₈O₉

Average Mass

388.4130 Da

Monoisotopic Mass

388.17333 Da

IUPAC Name

2-[(1R,2S)-3-oxo-2-[(2Z,4R)-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid

Traditional Name

[(1R,2S)-3-oxo-2-[(2Z,4R)-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid

CAS Registry Number

Not Available

SMILES

C[C@@H](O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)\C=C/C[C@H]1[C@@H](CC(O)=O)CCC1=O

InChI Identifier

InChI=1S/C18H28O9/c1-9(26-18-17(25)16(24)15(23)13(8-19)27-18)3-2-4-11-10(7-14(21)22)5-6-12(11)20/h2-3,9-11,13,15-19,23-25H,4-8H2,1H3,(H,21,22)/b3-2-/t9-,10-,11+,13-,15-,16+,17-,18-/m1/s1

InChI Key

LAYQBSCEPAXXNJ-JVMZRJCASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Solanum tuberosum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl glycosides

Direct Parent

Fatty acyl glycosides of mono- and disaccharides

Alternative Parents

Substituents

Fatty acyl glycoside of mono- or disaccharide
Jasmonic acid
Alkyl glycoside
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Monosaccharide
Oxane
Ketone
Cyclic ketone
Secondary alcohol
Monocarboxylic acid or derivatives
Acetal
Organoheterocyclic compound
Oxacycle
Carboxylic acid
Carboxylic acid derivative
Polyol
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Primary alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.67	ChemAxon
pKa (Strongest Acidic)	4.39	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	153.75 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	92.56 m³·mol⁻¹	ChemAxon
Polarizability	38.62 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163101933

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid (NP0276408)

MOL for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

3D MOL for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

3D SDF for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

3D-SDF for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

PDB for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

3D PDB for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

SMILES for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

INCHI for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

Structure for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)

3D Structure for NP0276408 ([(1r,2s)-3-oxo-2-[(2z,4r)-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}pent-2-en-1-yl]cyclopentyl]acetic acid)