NP-MRD: Showing NP-Card for 3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one (NP0275856)

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Record Information

Version

1.0

Created at

2022-09-08 23:44:19 UTC

Updated at

2022-09-08 23:44:19 UTC

NP-MRD ID

NP0275856

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one

Description

Zaluzanin A belongs to the class of organic compounds known as delta valerolactones. These are cyclic organic compounds containing an oxan-2- one moiety. It was first documented in 2012 (PMID: 22316136). Based on a literature review very few articles have been published on Zaluzanin A (PMID: 25115070).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 42  0  0  0  0  0  0  0  0999 V2000
   -2.8320    2.5915    0.5527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6683    1.9596    0.4262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6050    2.2106    1.3873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6068    3.2359    2.0894 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4041    1.2345    1.4662 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6682    0.3401    0.4233 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1571    0.1079    0.3635 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9501    1.3006   -0.0090 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2612   -1.0462   -0.5844 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4427   -1.7535   -0.4784 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1166   -1.9411   -0.1557 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1705   -1.0418    0.6483 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2326   -1.3086    0.3259 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9329   -2.3141    1.2500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6464   -1.4768   -1.1243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0419   -0.3049   -0.3066 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4028    0.9971   -0.6660 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0958    0.8799   -0.8459 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5497    2.1925   -1.1064 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6484    2.4359   -0.1369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9939    3.2883    1.3615 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4521   -0.2772    1.3765 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2731    1.3132   -1.0898 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8943    1.2986    0.6105 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4399    2.2510    0.2675 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1194   -0.7209   -1.6445 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0220   -1.6913   -1.2591 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4726   -2.7925    0.4594 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5973   -2.3930   -1.0282 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3717   -1.2928    1.7317 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9384   -1.9306    1.5282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3450   -2.4675    2.1830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9777   -3.2558    0.6969 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4683   -2.1711   -1.3802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8975   -1.3333   -1.9246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1114   -0.2034    0.0016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8515    1.3878   -1.6073 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3148    0.2963   -1.7371 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4277    2.3951   -2.0651 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  1
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18  6  1  0
  6  5  1  1
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  6  7  1  0
  6 12  1  0
 16 13  1  0
  2 17  1  0
  8 23  1  0
  8 24  1  0
  8 25  1  0
  7 22  1  1
  9 26  1  6
 10 27  1  0
 11 28  1  0
 11 29  1  0
 12 30  1  1
 14 31  1  0
 14 32  1  0
 14 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  1
 17 37  1  6
 18 38  1  6
 19 39  1  0
  1 20  1  0
  1 21  1  0
M  END


  Mrv1652309092201442D          

 19 22  0  0  0  0            999 V2000
    1.8204   -3.4644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2987   -2.8253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4607   -2.9790    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1548   -3.7452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0461   -2.2835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2379   -1.4369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5939   -1.2218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2094   -1.7712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7093   -0.4017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4320   -0.0038    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0473   -0.0598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6373   -0.6520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5052   -0.5458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4262    0.2754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3282   -0.4879    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9668   -1.2296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6190   -2.0300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9173   -1.7288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5917   -2.4868    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
  2 17  1  0  0  0  0
 17 18  1  0  0  0  0
  6 18  1  0  0  0  0
 18 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0275856

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1C(O)CC2C3(C)CC3C3C(O)C12OC(=O)C3=C

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O4/c1-6-11-8-5-14(8,3)10-4-9(16)7(2)15(10,12(11)17)19-13(6)18/h7-12,16-17H,1,4-5H2,2-3H3

> <INCHI_KEY>
LEHKEUSUFKGPBC-UHFFFAOYSA-N

> <FORMULA>
C15H20O4

> <MOLECULAR_WEIGHT>
264.321

> <EXACT_MASS>
264.136159124

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
27.633582742963842

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0^{1,5}.0^{6,8}]tridecan-11-one

> <JCHEM_LOGP>
0.7341494479999996

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.8799542641856

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.613675710091762

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8656010391214526

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
67.30369999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0^{1,5}.0^{6,8}]tridecan-11-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       3.398  -6.467   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.424  -5.274   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.860  -5.561   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.289  -6.991   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      -0.086  -4.263   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.444  -2.682   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.109  -2.281   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.257  -3.306   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.324  -0.750   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -2.673  -0.007   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.088  -0.112   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.190  -1.217   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.810  -1.019   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.662   0.514   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.346  -0.911   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.671  -2.295   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.022  -3.789   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.712  -3.227   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.105  -4.642   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   17                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   12   18                                             
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11    6   13                                                  
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   13   17                                                  
CONECT   17   16    2   18                                                  
CONECT   18   17    6   19                                                  
CONECT   19   18                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₄

Average Mass

264.3210 Da

Monoisotopic Mass

264.13616 Da

IUPAC Name

3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0^{1,5}.0^{6,8}]tridecan-11-one

Traditional Name

3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0^{1,5}.0^{6,8}]tridecan-11-one

CAS Registry Number

Not Available

SMILES

CC1C(O)CC2C3(C)CC3C3C(O)C12OC(=O)C3=C

InChI Identifier

InChI=1S/C15H20O4/c1-6-11-8-5-14(8,3)10-4-9(16)7(2)15(10,12(11)17)19-13(6)18/h7-12,16-17H,1,4-5H2,2-3H3

InChI Key

LEHKEUSUFKGPBC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as delta valerolactones. These are cyclic organic compounds containing an oxan-2- one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Delta valerolactones

Direct Parent

Delta valerolactones

Alternative Parents

Substituents

Delta valerolactone
Delta_valerolactone
Oxane
Cyclic alcohol
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.73	ChemAxon
pKa (Strongest Acidic)	13.61	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	67.3 m³·mol⁻¹	ChemAxon
Polarizability	27.63 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00021278

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101281382

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Ginotra SK, Friest JA, Berkowitz DB: Halocarbocyclization entry into the oxabicyclo[4.3.1]decyl exomethylene-delta-lactone cores of linearifolin and zaluzanin A: exploiting combinatorial catalysis. Org Lett. 2012 Feb 17;14(4):968-71. doi: 10.1021/ol203088g. Epub 2012 Feb 8. [PubMed:22316136 ]
Ortiz-Leon A, Torres-Valencia JM, Manriquez-Torres JJ, Alvarado-Rodriguez JG, Hernandez-Balderas U, Cerda-Garcia-Rojas CM, Joseph-Nathan P: Diastereoselective addition of diazomethane to zaluzanin A. Nat Prod Commun. 2014 Jun;9(6):753-6. [PubMed:25115070 ]
LOTUS database [Link]

Showing NP-Card for 3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one (NP0275856)

MOL for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

3D MOL for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

3D SDF for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

3D-SDF for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

PDB for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

3D PDB for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

SMILES for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

INCHI for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

Structure for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)

3D Structure for NP0275856 (3,13-dihydroxy-2,6-dimethyl-10-methylidene-12-oxatetracyclo[7.3.1.0¹,⁵.0⁶,⁸]tridecan-11-one)