NP-MRD: Showing NP-Card for 3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene (NP0275772)

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Record Information

Version

2.0

Created at

2022-09-08 23:37:44 UTC

Updated at

2022-09-08 23:37:44 UTC

NP-MRD ID

NP0275772

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene

Description

3-[(2S)-6-methylhept-5-en-2-yl]-6-methylidenecyclohexene belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. 3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene is found in Acorus calamus, Ageratum conyzoides, Alpinia chinensis, Alpinia conchigera, Alpinia galanga, Arabidopsis thaliana, Aster scaber, Calypogeia suecica, Centella asiatica, Chamaecyparis formosensis, Curcuma longa, Eupatorium capillifolium, Fitzroya cupressoides, Gundelia tournefortii, Helichrysum odoratissimum, Lantana camara, Marchantia chenopoda, Mosla cavaleriei, Onoseris onoseroides, Origanum vulgare, Pelargonium endlicherianum, Platostoma africanum, Solanum tuberosum, Solidago canadensis, Thymus longicaulis, Tripleurospermum maritimum, Vitex agnus-castus and Zingiber officinale. Based on a literature review very few articles have been published on 3-[(2S)-6-methylhept-5-en-2-yl]-6-methylidenecyclohexene.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 39  0  0  0  0  0  0  0  0999 V2000
   -4.7402    0.5520   -0.7783 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7900    0.1391    0.0305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7940    1.0235    0.6058 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6069    0.5618    0.8776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2181   -0.8187    0.6300 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3780   -0.8491   -0.6500 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2849   -0.4878   -1.8203 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6658    0.2255   -0.5375 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6514    0.0012    0.5804 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6019    1.1370    0.5512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8910    0.9011    0.3659 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3629   -0.5028    0.1900 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8446    2.0548    0.3378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3097   -1.8150    0.4863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6992   -1.2941    0.3979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8443    1.5793   -1.0714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4581   -0.1480   -1.1787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0934    2.0641    0.7881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8680    1.2384    1.3154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5022   -1.1617    1.4313 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0540   -1.8451   -0.8195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1299   -1.1801   -1.9332 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5617    0.5827   -1.7562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6335   -0.5707   -2.7244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2167    1.2329   -0.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2842    0.2457   -1.4875 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1436   -0.0001    1.5610 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1799   -0.9722    0.4785 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2250    2.1390    0.6819 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1478   -1.0949    1.0932 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4667   -0.4688    0.0300 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8756   -0.9811   -0.6721 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3260    2.9633   -0.0428 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2108    2.1951    1.3745 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6770    1.7500   -0.3287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0959   -2.5277   -0.3604 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2895   -2.4947    1.3931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3018   -1.5104    1.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2258   -1.8633   -0.4244 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  6  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  3
 11 12  1  0
 11 13  1  0
  6  5  1  0
  5 14  1  0
 14 15  1  0
 15  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  2  0
  4  5  1  0
  7 22  1  0
  7 23  1  0
  7 24  1  0
  6 21  1  6
  8 25  1  0
  8 26  1  0
  9 27  1  0
  9 28  1  0
 10 29  1  0
 12 30  1  0
 12 31  1  0
 12 32  1  0
 13 33  1  0
 13 34  1  0
 13 35  1  0
  5 20  1  1
 14 36  1  0
 14 37  1  0
 15 38  1  0
 15 39  1  0
  1 16  1  0
  1 17  1  0
  3 18  1  0
  4 19  1  0
M  END


  Mrv1652309092201372D          

 15 15  0  0  1  0            999 V2000
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
  5 14  1  0  0  0  0
 14 15  1  0  0  0  0
  2 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0275772

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H](CCC=C(C)C)C1CCC(=C)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H24/c1-12(2)6-5-7-14(4)15-10-8-13(3)9-11-15/h6,8,10,14-15H,3,5,7,9,11H2,1-2,4H3/t14-,15?/m0/s1

> <INCHI_KEY>
PHWISBHSBNDZDX-MLCCFXAWSA-N

> <FORMULA>
C15H24

> <MOLECULAR_WEIGHT>
204.357

> <EXACT_MASS>
204.187800773

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
26.73935328324024

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[(2S)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene

> <JCHEM_LOGP>
4.923184751333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
70.5495

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3-[(2S)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   15                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   14                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    5   15                                                       
CONECT   15   14    2                                                       
MASTER        0    0    0    0    0    0    0    0   15    0   30    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄

Average Mass

204.3570 Da

Monoisotopic Mass

204.18780 Da

IUPAC Name

3-[(2S)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene

Traditional Name

3-[(2S)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene

CAS Registry Number

Not Available

SMILES

C[C@@H](CCC=C(C)C)C1CCC(=C)C=C1

InChI Identifier

InChI=1S/C15H24/c1-12(2)6-5-7-14(4)15-10-8-13(3)9-11-15/h6,8,10,14-15H,3,5,7,9,11H2,1-2,4H3/t14-,15?/m0/s1

InChI Key

PHWISBHSBNDZDX-MLCCFXAWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Acorus calamus	LOTUS Database	35616633
Ageratum conyzoides	LOTUS Database	35616633
Alpinia chinensis	LOTUS Database	35616633
Alpinia conchigera	LOTUS Database	35616633
Alpinia galanga	LOTUS Database	35616633
Arabidopsis thaliana	LOTUS Database	35616633
Aster scaber	LOTUS Database	35616633
Calypogeia suecica	LOTUS Database	35616633
Centella asiatica	LOTUS Database	35616633
Chamaecyparis formosensis	LOTUS Database	35616633
Curcuma longa	LOTUS Database	35616633
Eupatorium capillifolium	LOTUS Database	35616633
Fitzroya cupressoides	LOTUS Database	35616633
Gundelia tournefortii	LOTUS Database	35616633
Helichrysum odoratissimum	LOTUS Database	35616633
Lantana camara	LOTUS Database	35616633
Marchantia chenopoda	LOTUS Database	35616633
Mosla cavaleriei	LOTUS Database	35616633
Onoseris onoseroides	LOTUS Database	35616633
Origanum vulgare	LOTUS Database	35616633
Pelargonium endlicherianum	LOTUS Database	35616633
Platostoma africanum	LOTUS Database	35616633
Solanum tuberosum	LOTUS Database	35616633
Solidago canadensis	LOTUS Database	35616633
Thymus longicaulis	LOTUS Database	35616633
Tripleurospermum maritimum	LOTUS Database	35616633
Vitex agnus-castus	LOTUS Database	35616633
Zingiber officinale	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Bisabolane sesquiterpenoid
Sesquiterpenoid
Branched unsaturated hydrocarbon
Cycloalkene
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.92	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	70.55 m³·mol⁻¹	ChemAxon
Polarizability	26.74 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4479076

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5321277

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene (NP0275772)

MOL for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

3D MOL for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

3D SDF for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

3D-SDF for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

PDB for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

3D PDB for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

SMILES for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

INCHI for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

Structure for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)

3D Structure for NP0275772 (3-[(2s)-6-methylhept-5-en-2-yl]-6-methylidenecyclohex-1-ene)