NP-MRD: Showing NP-Card for β-hederin (NP0275500)

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Record Information

Version

1.0

Created at

2022-09-08 23:15:58 UTC

Updated at

2022-09-08 23:15:58 UTC

NP-MRD ID

NP0275500

Secondary Accession Numbers

None

Natural Product Identification

Common Name

β-hederin

Description

Beta-Hederin, also known as β-hederin, belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. β-hederin is found in Akebia quinata, Anemoclema glaucifolium, Anemone chinensis, Anemone coronaria, Clematis tangutica, Eleutherococcus senticosus, Hedera caucasigena, Hedera helix, Hedera hibernica, Hedera nepalensis, Kalopanax septemlobus and Polyscias fulva. It was first documented in 2016 (PMID: 26902407). Based on a literature review a significant number of articles have been published on beta-Hederin (PMID: 30250584) (PMID: 30061173) (PMID: 29146183) (PMID: 28273565).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092201162D          

 52 58  0  0  1  0            999 V2000
    6.4895   -3.8743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770   -3.1599    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4895   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770   -1.7309    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4895   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3145   -1.0164    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7270   -0.3020    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4452   -1.1144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4733   -0.5841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    8.5520   -0.3020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5520   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9645   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7270   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3145   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8395   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -2.4454    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0145   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -3.1599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8395   -3.8743    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 23 22  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 23 30  1  0  0  0  0
 30 31  1  1  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 30 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 22 36  1  0  0  0  0
 17 36  1  0  0  0  0
 36 37  1  6  0  0  0
 14 38  1  0  0  0  0
  9 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
  7 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  6  0  0  0
 43 45  1  0  0  0  0
  6 45  1  0  0  0  0
 45 46  1  6  0  0  0
  4 47  1  0  0  0  0
 47 48  1  1  0  0  0
 47 49  1  0  0  0  0
 49 50  1  1  0  0  0
 49 51  1  0  0  0  0
  2 51  1  0  0  0  0
 51 52  1  6  0  0  0
M  END

     RDKit          3D

118124  0  0  0  0  0  0  0  0999 V2000
    7.9831    2.0406    2.0564 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8586    1.3214    1.0270 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.1061    1.1643   -0.1113 O   0  0  0  0  0  0  0  0  0  0  0  0
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    5.3469   -0.3721   -0.7574 C   0  0  1  0  0  0  0  0  0  0  0  0
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    2.2968    1.2563   -0.1751 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4542    2.0103   -1.1582 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0107    1.9075   -1.0217 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3435   -0.6810    1.7066 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.1809   -0.1915   -0.2722 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -9.5082    1.1080   -1.5468 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.6193   -1.1528   -0.5456 C   0  0  2  0  0  0  0  0  0  0  0  0
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   10.3389   -2.0063    0.8464 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3592    0.0045    1.5368 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.4596    0.1657    2.3774 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0349    1.5685    2.1412 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.9944   -0.1895   -2.8139 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8234   -1.0605   -3.4839 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6972   -2.8129   -3.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7214   -2.3908   -1.4976 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9132   -2.9556   -0.5938 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8608   -1.1798   -1.6198 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2812   -3.1129   -0.7442 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5732   -0.2667   -0.2479 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6451   -2.6001    0.1184 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5825   -0.5027    2.1085 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2473    0.5220    1.8950 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6 45  1  0
 45 46  1  0
 45 43  1  0
 43 44  1  0
 43 42  1  0
 42 41  1  0
 41  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  6
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  6
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  1  0
 25 28  1  0
 28 29  1  0
 29 30  1  0
 30 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  1
 30 31  1  6
 31 33  1  0
 31 32  2  0
 14 38  1  0
 38 39  1  0
 38 40  1  0
  4 47  1  0
 47 48  1  0
 47 49  1  0
 49 50  1  0
 49 51  1  0
 51 52  1  0
 51  2  1  0
  7  6  1  0
 38  9  1  0
 19 12  1  0
 36 22  1  0
 36 17  1  0
 30 23  1  0
  1 53  1  0
  1 54  1  0
  1 55  1  0
  2 56  1  6
  4 57  1  1
  6 58  1  1
 45111  1  6
 46112  1  0
 43109  1  6
 44110  1  0
 42107  1  0
 42108  1  0
  7 59  1  1
  9 60  1  1
 10 61  1  0
 10 62  1  0
 11 63  1  0
 11 64  1  0
 13 65  1  0
 13 66  1  0
 13 67  1  0
 14 68  1  1
 15 69  1  0
 15 70  1  0
 16 71  1  0
 16 72  1  0
 18 73  1  0
 18 74  1  0
 18 75  1  0
 19 76  1  1
 20 77  1  0
 20 78  1  0
 21 79  1  0
 23 80  1  6
 24 81  1  0
 24 82  1  0
 26 83  1  0
 26 84  1  0
 26 85  1  0
 27 86  1  0
 27 87  1  0
 27 88  1  0
 28 89  1  0
 28 90  1  0
 29 91  1  0
 29 92  1  0
 34 94  1  0
 34 95  1  0
 35 96  1  0
 35 97  1  0
 37 98  1  0
 37 99  1  0
 37100  1  0
 33 93  1  0
 39101  1  0
 39102  1  0
 39103  1  0
 40104  1  0
 40105  1  0
 40106  1  0
 47113  1  6
 48114  1  0
 49115  1  6
 50116  1  0
 51117  1  1
 52118  1  0
M  END


  Mrv1652309092201162D          

 52 58  0  0  1  0            999 V2000
    6.4895   -3.8743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770   -3.1599    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4895   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770   -1.7309    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4895   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3145   -1.0164    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7270   -0.3020    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4452   -1.1144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4733   -0.5841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6907    1.9475    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1058    1.9515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7766    1.5642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5520   -0.3020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9645   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5520   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9645   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7270   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3145   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -1.7309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8395   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -2.4454    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0145   -2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -3.1599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8395   -3.8743    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 23 22  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 23 30  1  0  0  0  0
 30 31  1  1  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 30 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 22 36  1  0  0  0  0
 17 36  1  0  0  0  0
 36 37  1  6  0  0  0
 14 38  1  0  0  0  0
  9 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
  7 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  6  0  0  0
 43 45  1  0  0  0  0
  6 45  1  0  0  0  0
 45 46  1  6  0  0  0
  4 47  1  0  0  0  0
 47 48  1  1  0  0  0
 47 49  1  0  0  0  0
 49 50  1  1  0  0  0
 49 51  1  0  0  0  0
  2 51  1  0  0  0  0
 51 52  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0275500

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)CO[C@H]2O[C@H]2CC[C@@]3(C)[C@@H](CC[C@]4(C)[C@@H]3CC=C3[C@@H]5CC(C)(C)CC[C@@]5(CC[C@@]43C)C(O)=O)C2(C)C)[C@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C41H66O11/c1-21-28(43)30(45)31(46)33(50-21)52-32-29(44)24(42)20-49-34(32)51-27-12-13-38(6)25(37(27,4)5)11-14-40(8)26(38)10-9-22-23-19-36(2,3)15-17-41(23,35(47)48)18-16-39(22,40)7/h9,21,23-34,42-46H,10-20H2,1-8H3,(H,47,48)/t21-,23-,24-,25-,26+,27-,28-,29-,30+,31+,32+,33-,34-,38-,39+,40+,41-/m0/s1

> <INCHI_KEY>
IBAJNOZMACNWJD-HVUPOBLPSA-N

> <FORMULA>
C41H66O11

> <MOLECULAR_WEIGHT>
734.968

> <EXACT_MASS>
734.460512945

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
118

> <JCHEM_AVERAGE_POLARIZABILITY>
82.1279767435279

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4aS,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2S,3R,4S,5S)-4,5-dihydroxy-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylic acid

> <JCHEM_LOGP>
4.730407050666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.127001075617995

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.744259175275854

> <JCHEM_PKA_STRONGEST_BASIC>
-3.526877458794903

> <JCHEM_POLAR_SURFACE_AREA>
175.36999999999998

> <JCHEM_REFRACTIVITY>
190.94490000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
β-hederin

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      12.114  -7.232   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.344  -5.898   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      12.114  -4.565   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      11.344  -3.231   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      12.114  -1.897   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      13.654  -1.897   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      14.424  -0.564   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      13.654   0.770   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      12.114   0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.344  -0.564   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.034   0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.264  -0.564   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.804   2.104   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.034   3.437   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.494   3.437   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.831  -2.080   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.883  -1.090   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.334   3.437   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       2.104   4.771   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      -0.206   3.437   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       2.874   3.437   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       4.414   3.437   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.023   3.635   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      11.344   2.104   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      11.397   3.643   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      12.650   2.920   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      15.964  -0.564   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      16.734  -1.897   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      15.964  -3.231   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      16.734  -4.565   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      14.424  -3.231   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      13.654  -4.565   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0       9.804  -3.231   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0       9.034  -1.897   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0       9.034  -4.565   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0       7.494  -4.565   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0       9.804  -5.898   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0       9.034  -7.232   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   51                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   47                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   45                                                  
CONECT    7    6    8   41                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   38                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   19                                             
CONECT   13   12                                                            
CONECT   14   12   15   38                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   36                                             
CONECT   18   17                                                            
CONECT   19   17   12   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   36                                                  
CONECT   23   22   24   30                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   27   28                                             
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   25   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   23   31   34                                             
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   30   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   22   17   37                                             
CONECT   37   36                                                            
CONECT   38   14    9   39   40                                             
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41    7   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43    6   46                                                  
CONECT   46   45                                                            
CONECT   47    4   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49    2   52                                                  
CONECT   52   51                                                            
MASTER        0    0    0    0    0    0    0    0   52    0  116    0
END

View in JSmol

Synonyms

Value	Source
b-Hederin	Generator
Β-hederin	Generator
(3beta)-3-((2-O-(6-Deoxy-alpha-L-mannopyranosyl)-alpha-L-arabinopyranosyl)oxy)olean-12-en-28-Oic acid	MeSH

Chemical Formula

C₄₁H₆₆O₁₁

Average Mass

734.9680 Da

Monoisotopic Mass

734.46051 Da

IUPAC Name

(4aS,6aS,6bR,8aR,10S,12aR,12bR,14bS)-10-{[(2S,3R,4S,5S)-4,5-dihydroxy-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylic acid

Traditional Name

β-hederin

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)CO[C@H]2O[C@H]2CC[C@@]3(C)[C@@H](CC[C@]4(C)[C@@H]3CC=C3[C@@H]5CC(C)(C)CC[C@@]5(CC[C@@]43C)C(O)=O)C2(C)C)[C@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C41H66O11/c1-21-28(43)30(45)31(46)33(50-21)52-32-29(44)24(42)20-49-34(32)51-27-12-13-38(6)25(37(27,4)5)11-14-40(8)26(38)10-9-22-23-19-36(2,3)15-17-41(23,35(47)48)18-16-39(22,40)7/h9,21,23-34,42-46H,10-20H2,1-8H3,(H,47,48)/t21-,23-,24-,25-,26+,27-,28-,29-,30+,31+,32+,33-,34-,38-,39+,40+,41-/m0/s1

InChI Key

IBAJNOZMACNWJD-HVUPOBLPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Akebia quinata	LOTUS Database	35616633
Anemoclema glaucifolium	LOTUS Database	35616633
Anemone chinensis	LOTUS Database	35616633
Anemone coronaria	LOTUS Database	35616633
Clematis tangutica	LOTUS Database	35616633
Eleutherococcus senticosus	LOTUS Database	35616633
Hedera caucasigena	LOTUS Database	35616633
Hedera helix	LOTUS Database	35616633
Hedera hibernica	LOTUS Database	35616633
Hedera nepalensis	LOTUS Database	35616633
Kalopanax septemlobus	LOTUS Database	35616633
Polyscias fulva	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Disaccharide
Glycosyl compound
O-glycosyl compound
Oxane
Secondary alcohol
Acetal
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Oxacycle
Polyol
Organoheterocyclic compound
Organic oxide
Carbonyl group
Hydrocarbon derivative
Organooxygen compound
Alcohol
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

triterpenoid (CHEBI:10419 )
Oleananes (C08955 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.73	ChemAxon
pKa (Strongest Acidic)	4.74	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	175.37 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	190.94 m³·mol⁻¹	ChemAxon
Polarizability	82.13 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00003529

Chemspider ID

390503

KEGG Compound ID

C08955

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

441929

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Chen WX, Cheng L, Pan M, Qian Q, Zhu YL, Xu LY, Ding Q: D Rhamnose beta-Hederin against human breast cancer by reducing tumor-derived exosomes. Oncol Lett. 2018 Oct;16(4):5172-5178. doi: 10.3892/ol.2018.9254. Epub 2018 Aug 2. [PubMed:30250584 ]
Chen WX, Xu LY, Qian Q, He X, Peng WT, Fan WQ, Zhu YL, Tang JH, Cheng L: d Rhamnose beta-hederin reverses chemoresistance of breast cancer cells by regulating exosome-mediated resistance transmission. Biosci Rep. 2018 Sep 28;38(5):BSR20180110. doi: 10.1042/BSR20180110. Print 2018 Oct 31. [PubMed:30061173 ]
Cheng L, Xia TS, Shi L, Xu L, Chen W, Zhu Y, Ding Q: D Rhamnose beta-hederin inhibits migration and invasion of human breast cancer cell line MDA-MB-231. Biochem Biophys Res Commun. 2018 Jan 1;495(1):775-780. doi: 10.1016/j.bbrc.2017.11.081. Epub 2017 Nov 14. [PubMed:29146183 ]
Wang L, Wang Z, Su S, Xing Y, Li Y, Li M, Liu J, Yang S: Synthesis and cytotoxicity of oleanolic acid trisaccharide saponins. Carbohydr Res. 2017 Apr 10;442:9-16. doi: 10.1016/j.carres.2017.02.010. Epub 2017 Feb 28. [PubMed:28273565 ]
Schulte-Michels J, Wolf A, Aatz S, Engelhard K, Sieben A, Martinez-Osuna M, Haberlein F, Haberlein H: alpha-Hederin inhibits G protein-coupled receptor kinase 2-mediated phosphorylation of beta2-adrenergic receptors. Phytomedicine. 2016 Jan 15;23(1):52-7. doi: 10.1016/j.phymed.2015.12.001. Epub 2015 Dec 18. [PubMed:26902407 ]
LOTUS database [Link]

Showing NP-Card for β-hederin (NP0275500)

MOL for NP0275500 (β-hederin)

3D MOL for NP0275500 (β-hederin)

3D SDF for NP0275500 (β-hederin)

3D-SDF for NP0275500 (β-hederin)

PDB for NP0275500 (β-hederin)

3D PDB for NP0275500 (β-hederin)

SMILES for NP0275500 (β-hederin)

INCHI for NP0275500 (β-hederin)

Structure for NP0275500 (β-hederin)

3D Structure for NP0275500 (β-hederin)