NP-MRD: Showing NP-Card for 7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one (NP0275344)

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Record Information

Version

2.0

Created at

2022-09-08 23:03:29 UTC

Updated at

2022-09-08 23:03:29 UTC

NP-MRD ID

NP0275344

Secondary Accession Numbers

None

Natural Product Identification

Common Name

7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one

Description

Sanggenol I belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety. 7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one is found in Morus cathayana. Based on a literature review very few articles have been published on Sanggenol I.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092201032D          

 37 40  0  0  0  0            999 V2000
    6.2015   -5.8125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5823   -5.2673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8006   -5.5309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7450   -4.4585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1258   -3.9132    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2884   -3.1044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6693   -2.5592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8875   -2.8228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2128   -1.2051    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3754   -0.3963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 17 36  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309092201032D          

 37 40  0  0  0  0            999 V2000
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 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 11 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 20 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 26 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 20 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 17 36  1  0  0  0  0
 36 37  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0275344

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC\C(C)=C\CC1=C(O)C=C(O)C2=C1OC1(CC=C(C)C)C3=CC=C(O)C=C3OC1(O)C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C30H34O7/c1-17(2)7-6-8-19(5)9-11-21-23(32)16-24(33)26-27(21)37-29(14-13-18(3)4)22-12-10-20(31)15-25(22)36-30(29,35)28(26)34/h7,9-10,12-13,15-16,31-33,35H,6,8,11,14H2,1-5H3/b19-9+

> <INCHI_KEY>
NXWCPHHIAZFSGN-DJKKODMXSA-N

> <FORMULA>
C30H34O7

> <MOLECULAR_WEIGHT>
506.595

> <EXACT_MASS>
506.230453435

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
55.03095035464031

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
7-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-3(8),4,6,11,13,15-hexaen-2-one

> <JCHEM_LOGP>
7.405317851333332

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.651726930003775

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.442616266971298

> <JCHEM_PKA_STRONGEST_BASIC>
-4.742829667944683

> <JCHEM_POLAR_SURFACE_AREA>
116.45000000000002

> <JCHEM_REFRACTIVITY>
144.1805

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
7-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-3(8),4,6,11,13,15-hexaen-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      11.576 -10.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.420  -9.832   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.961 -10.324   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.724  -8.322   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.568  -7.305   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.872  -5.795   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.716  -4.777   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.257  -5.269   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.020  -3.267   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.864  -2.250   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.167  -0.740   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.627  -0.248   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      10.782  -1.266   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       9.930   1.262   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.774   2.280   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       9.078   3.790   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       7.315   1.788   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.012   0.278   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.552  -0.214   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       4.397   0.804   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.937  -0.666   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.980  -1.799   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.520  -3.269   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.017  -3.606   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.563  -4.402   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.867   0.626   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.976  -0.630   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.442  -0.486   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -0.200   0.914   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -1.733   1.058   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       0.692   2.170   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.225   2.026   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       3.358   3.069   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       4.700   2.314   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       4.844   3.847   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       6.159   2.806   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       6.463   4.315   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   18                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   36                                                  
CONECT   18   17   11   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   26   34                                             
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   20   27   32                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   26   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33   20   35   36                                             
CONECT   35   34                                                            
CONECT   36   34   17   37                                                  
CONECT   37   36                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₃₄O₇

Average Mass

506.5950 Da

Monoisotopic Mass

506.23045 Da

IUPAC Name

7-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-3(8),4,6,11,13,15-hexaen-2-one

Traditional Name

7-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-3(8),4,6,11,13,15-hexaen-2-one

CAS Registry Number

Not Available

SMILES

CC(C)=CCC\C(C)=C\CC1=C(O)C=C(O)C2=C1OC1(CC=C(C)C)C3=CC=C(O)C=C3OC1(O)C2=O

InChI Identifier

InChI=1S/C30H34O7/c1-17(2)7-6-8-19(5)9-11-21-23(32)16-24(33)26-27(21)37-29(14-13-18(3)4)22-12-10-20(31)15-25(22)36-30(29,35)28(26)34/h7,9-10,12-13,15-16,31-33,35H,6,8,11,14H2,1-5H3/b19-9+

InChI Key

NXWCPHHIAZFSGN-DJKKODMXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Morus cathayana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Chromones

Alternative Parents

Substituents

Chromone
Aromatic monoterpenoid
Monoterpenoid
Coumaran
Aryl alkyl ketone
Aryl ketone
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Benzenoid
Vinylogous acid
Hemiacetal
Ketone
Ether
Oxacycle
Polyol
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.41	ChemAxon
pKa (Strongest Acidic)	7.44	ChemAxon
pKa (Strongest Basic)	-4.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	116.45 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	144.18 m³·mol⁻¹	ChemAxon
Polarizability	55.03 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00014397

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101938899

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one (NP0275344)

MOL for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

3D MOL for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

3D SDF for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

3D-SDF for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

PDB for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

3D PDB for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

SMILES for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

INCHI for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

Structure for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)

3D Structure for NP0275344 (7-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-1,4,6,14-tetrahydroxy-10-(3-methylbut-2-en-1-yl)-9,17-dioxatetracyclo[8.7.0.0³,⁸.0¹¹,¹⁶]heptadeca-3(8),4,6,11,13,15-hexaen-2-one)