NP-MRD: Showing NP-Card for (1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid (NP0275176)

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Record Information

Version

2.0

Created at

2022-09-08 22:49:58 UTC

Updated at

2022-09-08 22:49:58 UTC

NP-MRD ID

NP0275176

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid

Description

RebaudiosideB belongs to the class of organic compounds known as steviol glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically linked to a steviol (a diterpenoid based on a 13-Hydroxykaur-16-en-18-oic acid) moiety. (1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid is found in Stevia rebaudiana. Based on a literature review very few articles have been published on rebaudiosideB.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092200502D          

 56 62  0  0  1  0            999 V2000
    0.0435   -0.0007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8566   -0.1407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4794    0.4660    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2893    0.0832    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5946    0.8699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4039    1.0366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9582    0.4175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7095   -0.3691    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4700   -1.1586    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2663   -0.9778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0719   -0.7999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3206   -0.0133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7638    0.5954    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6141    1.4067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3527    1.1732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1475    0.9521    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1467    1.9721    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8883   -0.5708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6431   -1.4156    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7976   -1.5743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2377   -0.9152    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5480   -1.3678    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5951   -2.1915    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3320   -2.5625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3791   -3.3861    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1160   -3.7572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1631   -4.5808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6893   -3.8388    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7365   -4.6624    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0475   -3.4678    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7373   -3.9204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6901   -4.7441    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0467   -5.1151    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0939   -5.9387    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8307   -6.3097    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5205   -5.8571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5959   -6.3914    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5488   -7.2150    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3328   -6.0203    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0225   -6.4730    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3799   -5.1967    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1167   -4.8257    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0947   -2.6441    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8315   -2.2731    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5213   -2.7257    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2581   -2.3547    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9479   -2.8074    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6847   -2.4364    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7319   -1.6127    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9007   -3.6310    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5905   -4.0837    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1639   -4.0020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6099   -4.6961    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4741   -3.5494    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0961   -4.2827    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8140   -0.4494    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  6  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
  8 18  1  0  0  0  0
  4 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  2 21  1  0  0  0  0
 21 22  1  6  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  1  0  0  0
 26 27  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  6  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 32 31  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  1  0  0  0
 35 36  1  0  0  0  0
 34 37  1  0  0  0  0
 37 38  1  6  0  0  0
 37 39  1  0  0  0  0
 39 40  1  1  0  0  0
 39 41  1  0  0  0  0
 32 41  1  0  0  0  0
 41 42  1  6  0  0  0
 30 43  1  0  0  0  0
 23 43  1  0  0  0  0
 43 44  1  6  0  0  0
 45 44  1  6  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  6  0  0  0
 48 49  1  0  0  0  0
 47 50  1  0  0  0  0
 50 51  1  1  0  0  0
 50 52  1  0  0  0  0
 52 53  1  6  0  0  0
 52 54  1  0  0  0  0
 45 54  1  0  0  0  0
 54 55  1  1  0  0  0
 21 56  1  0  0  0  0
  4 56  1  6  0  0  0
M  END

     RDKit          3D

116122  0  0  0  0  0  0  0  0999 V2000
    2.4664   -0.2501   -2.5150 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3288   -0.7408   -1.3183 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4036   -1.5669   -0.6520 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3207   -1.0423    0.7374 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1170   -1.7558    1.7646 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5779   -1.3938    1.5378 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8298    0.0877    1.7061 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8956    0.9106    0.8563 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8896    2.3137    1.4821 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5205    0.9737   -0.4934 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6600    1.9700   -0.3875 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6622    1.4431    0.5614 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2579    0.4398    1.5574 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.0348   -0.8515    1.2480 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8491    0.8587    2.8920 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1464    1.1099    3.8855 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2297    0.9692    3.0149 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4941    0.4232    0.9310 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5595    1.3133    0.1643 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1389    0.7748    0.0788 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2585   -0.6875   -0.3028 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1225   -1.3503   -0.5552 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6713   -1.0531   -1.5944 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8354   -2.0358   -2.5600 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9698   -2.8028   -2.3738 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8973   -4.1310   -3.0902 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7521   -3.9655   -4.4651 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2625   -3.0003   -0.9061 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1548   -4.0390   -0.7795 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8422   -1.6623   -0.4479 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9430   -1.6230    0.9356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2678   -1.5618    1.2894 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6858   -2.6938    2.0026 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0556   -2.7954    1.8588 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.5997   -4.0539    2.4982 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9801   -4.1461    2.3398 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8366   -1.6086    2.3073 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.0327   -1.5959    1.5501 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1645   -0.2850    2.0743 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.6471    0.6451    2.9885 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6364   -0.3828    2.1599 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0698    0.7746    1.6941 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0349   -0.5800   -1.0582 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6948    0.1048   -2.1098 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8575    1.4548   -1.8246 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9636    2.1178   -2.7126 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9843    3.4885   -2.3811 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8676    4.1817   -3.1307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8662    5.5450   -2.8144 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3177    4.0367   -2.7970 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3758    5.4197   -2.7300 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.6289    3.7917   -2.4901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2593    1.8878   -2.0636 C   0  0  2  0  0  0  0  0  0  0  0  0
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    1.8385   -1.3275    0.9813 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4115   -0.4535   -3.0569 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7781    0.3550   -3.0871 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9917   -2.6068   -0.6332 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3431   -1.5828   -1.1550 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0321   -2.8476    1.7806 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8413   -1.3443    2.7654 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1198   -1.9461    2.3531 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8401   -1.7760    0.5452 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5233    0.3123    2.7725 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8609    2.6162    1.8580 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4074    3.0517    0.7839 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1942    2.2707    2.3722 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0445   -0.0021   -0.7182 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8443    1.1853   -1.3287 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0902    2.0364   -1.4170 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2982    2.9924   -0.1630 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1068    2.3548    1.0816 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5553    1.0922   -0.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1019   -0.4812    1.1339 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7898   -1.2741    0.2744 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0717   -1.5421    2.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8266    1.2120    2.2190 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1982    0.5858    2.0212 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9284    1.6164   -0.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4697    2.2824    0.7311 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6324    1.3204   -0.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5632    0.9454    0.9992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2666   -0.1779   -2.1409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8240   -2.2477   -2.8063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7510   -4.7679   -2.8486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9748   -4.6554   -2.7263 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.3543   -3.2682   -0.3288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9880   -3.9095   -1.2773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8627   -1.6247   -0.8774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9442   -1.5325    0.3959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2342   -2.9110    0.7483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1682   -4.9692    2.0544 H   0  0  0  0  0  0  0  0  0  0  0  0
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 17 78  1  0
M  END


  Mrv1652309092200502D          

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M  END
> <DATABASE_ID>
NP0275176

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12CCC[C@](C)(C1CC[C@@]13CC(=C)[C@@](C1)(CCC23)O[C@H]1O[C@@H](CO)[C@H](O)[C@@H](O[C@H]2O[C@@H](CO)[C@H](O)[C@@H](O)[C@@H]2O)[C@@H]1O[C@H]1O[C@@H](CO)[C@H](O)[C@@H](O)[C@@H]1O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C38H60O18/c1-16-11-37-9-5-20-35(2,7-4-8-36(20,3)34(49)50)21(37)6-10-38(16,15-37)56-33-30(55-32-28(48)26(46)23(43)18(13-40)52-32)29(24(44)19(14-41)53-33)54-31-27(47)25(45)22(42)17(12-39)51-31/h17-33,39-48H,1,4-15H2,2-3H3,(H,49,50)/t17-,18-,19-,20?,21?,22-,23-,24-,25+,26+,27-,28-,29+,30-,31+,32+,33+,35+,36+,37+,38-/m0/s1

> <INCHI_KEY>
DRSKVOAJKLUMCL-FIPBZOTESA-N

> <FORMULA>
C38H60O18

> <MOLECULAR_WEIGHT>
804.88

> <EXACT_MASS>
804.377965092

> <JCHEM_ACCEPTOR_COUNT>
18

> <JCHEM_ATOM_COUNT>
116

> <JCHEM_AVERAGE_POLARIZABILITY>
82.25111396607305

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
11

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,5R,9S,13S)-13-{[(2R,3S,4R,5S,6S)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

> <JCHEM_LOGP>
-1.6639759376666663

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.880022278096908

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.59047782699569

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6483775752817795

> <JCHEM_POLAR_SURFACE_AREA>
294.97999999999996

> <JCHEM_REFRACTIVITY>
186.13160000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5R,9S,13S)-13-{[(2R,3S,4R,5S,6S)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       0.081  -0.001   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.599  -0.263   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.761   0.870   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.273   0.155   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.843   1.624   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.354   1.935   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.389   0.779   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.924  -0.689   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.477  -2.163   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.964  -1.825   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.468  -1.493   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.932  -0.025   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.892   1.111   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.613   2.626   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.992   2.190   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      11.475   1.777   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       9.607   3.681   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       5.392  -1.066   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.934  -2.642   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.356  -2.939   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.310  -1.708   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       1.023  -2.553   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.111  -4.091   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.486  -4.783   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       2.574  -6.321   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.950  -7.013   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.038  -8.551   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       1.287  -7.166   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       1.375  -8.703   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -0.089  -6.473   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -1.376  -7.318   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -1.288  -8.856   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.087  -9.548   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       0.175 -11.086   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.551 -11.778   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       2.838 -10.933   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -1.112 -11.931   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      -1.024 -13.468   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -2.488 -11.238   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -3.775 -12.083   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -2.576  -9.701   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -3.951  -9.008   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -0.177  -4.936   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -1.552  -4.243   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -2.840  -5.088   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      -4.215  -4.395   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      -5.503  -5.240   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -6.878  -4.548   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      -6.966  -3.010   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      -5.415  -6.778   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      -6.702  -7.623   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      -4.039  -7.470   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      -4.872  -8.766   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0      -2.752  -6.626   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0      -2.046  -7.994   0.000  0.00  0.00           O+0
HETATM   56  C   UNK     0       3.386  -0.839   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   18   56                                             
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   13                                                  
CONECT    8    7    9   10   18                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    7   14   15                                             
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18    8    4   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20    2   22   56                                             
CONECT   22   21   23                                                       
CONECT   23   22   24   43                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   28                                                  
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   25   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   43                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   41                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35   37                                                  
CONECT   35   34   36                                                       
CONECT   36   35                                                            
CONECT   37   34   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   32   42                                                  
CONECT   42   41                                                            
CONECT   43   30   23   44                                                  
CONECT   44   43   45                                                       
CONECT   45   44   46   54                                                  
CONECT   46   45   47                                                       
CONECT   47   46   48   50                                                  
CONECT   48   47   49                                                       
CONECT   49   48                                                            
CONECT   50   47   51   52                                                  
CONECT   51   50                                                            
CONECT   52   50   53   54                                                  
CONECT   53   52                                                            
CONECT   54   52   45   55                                                  
CONECT   55   54                                                            
CONECT   56   21    4                                                       
MASTER        0    0    0    0    0    0    0    0   56    0  124    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₈H₆₀O₁₈

Average Mass

804.8800 Da

Monoisotopic Mass

804.37797 Da

IUPAC Name

(1R,5R,9S,13S)-13-{[(2R,3S,4R,5S,6S)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@]12CCC[C@](C)(C1CC[C@@]13CC(=C)[C@@](C1)(CCC23)O[C@H]1O[C@@H](CO)[C@H](O)[C@@H](O[C@H]2O[C@@H](CO)[C@H](O)[C@@H](O)[C@@H]2O)[C@@H]1O[C@H]1O[C@@H](CO)[C@H](O)[C@@H](O)[C@@H]1O)C(O)=O

InChI Identifier

InChI=1S/C38H60O18/c1-16-11-37-9-5-20-35(2,7-4-8-36(20,3)34(49)50)21(37)6-10-38(16,15-37)56-33-30(55-32-28(48)26(46)23(43)18(13-40)52-32)29(24(44)19(14-41)53-33)54-31-27(47)25(45)22(42)17(12-39)51-31/h17-33,39-48H,1,4-15H2,2-3H3,(H,49,50)/t17-,18-,19-,20?,21?,22-,23-,24-,25+,26+,27-,28-,29+,30-,31+,32+,33+,35+,36+,37+,38-/m0/s1

InChI Key

DRSKVOAJKLUMCL-FIPBZOTESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Stevia rebaudiana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steviol glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically linked to a steviol (a diterpenoid based on a 13-Hydroxykaur-16-en-18-oic acid) moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Steviol glycosides

Alternative Parents

Substituents

Steviol glycoside
Oligosaccharide
Diterpenoid
Kaurane diterpenoid
Fatty acyl glycoside
Glycosyl compound
O-glycosyl compound
Fatty acyl
Oxane
Secondary alcohol
Oxacycle
Carboxylic acid derivative
Carboxylic acid
Acetal
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Polyol
Hydrocarbon derivative
Alcohol
Organic oxide
Organic oxygen compound
Organooxygen compound
Primary alcohol
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.7	ChemAxon
pKa (Strongest Acidic)	4.59	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	18	ChemAxon
Hydrogen Donor Count	11	ChemAxon
Polar Surface Area	294.98 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	186.13 m³·mol⁻¹	ChemAxon
Polarizability	82.25 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

2342102

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3085143

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid (NP0275176)

MOL for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D MOL for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D SDF for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D-SDF for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

PDB for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D PDB for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

SMILES for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

INCHI for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

Structure for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D Structure for NP0275176 ((1r,5r,9s,13s)-13-{[(2r,3s,4r,5s,6s)-5-hydroxy-6-(hydroxymethyl)-3,4-bis({[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)