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Record Information
Version2.0
Created at2022-09-08 22:49:09 UTC
Updated at2022-09-08 22:49:09 UTC
NP-MRD IDNP0275166
Secondary Accession NumbersNone
Natural Product Identification
Common Name2-[(2r,8r,11r,14s,17r)-17-[(2s)-butan-2-yl]-3,6,9,12,15,18-hexahydroxy-8-(1h-indol-3-ylmethyl)-11,14-bis(2-methylpropyl)-1,4,7,10,13,16-hexaazacyclooctadeca-1(18),3,6,9,12,15-hexaen-2-yl]ethanimidic acid
DescriptionDesotamide belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone. 2-[(2r,8r,11r,14s,17r)-17-[(2s)-butan-2-yl]-3,6,9,12,15,18-hexahydroxy-8-(1h-indol-3-ylmethyl)-11,14-bis(2-methylpropyl)-1,4,7,10,13,16-hexaazacyclooctadeca-1(18),3,6,9,12,15-hexaen-2-yl]ethanimidic acid was first documented in 2014 (PMID: 25072108). Based on a literature review a significant number of articles have been published on desotamide (PMID: 25747118) (PMID: 34073984) (PMID: 32727132) (PMID: 32002605) (PMID: 29431987) (PMID: 29129945).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC35H52N8O7
Average Mass696.8500 Da
Monoisotopic Mass696.39590 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
CC[C@H](C)[C@H]1N=C(O)[C@H](CC(C)C)N=C(O)[C@@H](CC(C)C)N=C(O)[C@@H](CC2=CNC3=CC=CC=C23)N=C(O)CN=C(O)[C@@H](CC(O)=N)N=C1O
InChI Identifier
InChI=1S/C35H52N8O7/c1-7-20(6)30-35(50)42-27(15-28(36)44)31(46)38-17-29(45)39-26(14-21-16-37-23-11-9-8-10-22(21)23)33(48)40-24(12-18(2)3)32(47)41-25(13-19(4)5)34(49)43-30/h8-11,16,18-20,24-27,30,37H,7,12-15,17H2,1-6H3,(H2,36,44)(H,38,46)(H,39,45)(H,40,48)(H,41,47)(H,42,50)(H,43,49)/t20-,24+,25-,26+,27+,30+/m0/s1
InChI KeyLJGXNPVJAKBNOK-ZXCSEHFOSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentCyclic peptides
Alternative Parents
Substituents
  • Cyclic alpha peptide
  • 3-alkylindole
  • Indole or derivatives
  • Indole
  • Benzenoid
  • Substituted pyrrole
  • Heteroaromatic compound
  • Cyclic carboximidic acid
  • Pyrrole
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Polyol
  • Carboximidic acid derivative
  • Carboximidic acid
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.44ChemAxon
pKa (Strongest Acidic)-1.1ChemAxon
pKa (Strongest Basic)12.75ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count9ChemAxon
Rotatable Bond Count10ChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound133562661
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Song Y, Li Q, Liu X, Chen Y, Zhang Y, Sun A, Zhang W, Zhang J, Ju J: Cyclic Hexapeptides from the Deep South China Sea-Derived Streptomyces scopuliridis SCSIO ZJ46 Active Against Pathogenic Gram-Positive Bacteria. J Nat Prod. 2014 Aug 22;77(8):1937-41. doi: 10.1021/np500399v. [PubMed:25072108 ]
  2. Li Q, Song Y, Qin X, Zhang X, Sun A, Ju J: Identification of the Biosynthetic Gene Cluster for the Anti-infective Desotamides and Production of a New Analogue in a Heterologous Host. J Nat Prod. 2015 Apr 24;78(4):944-8. doi: 10.1021/acs.jnatprod.5b00009. Epub 2015 Mar 6. [PubMed:25747118 ]
  3. Xu R, Song Y, Li J, Ju J, Li Q: Chemical Synthesis and Structure-Activity Relationship Study Yield Desotamide a Analogues with Improved Antibacterial Activity. Mar Drugs. 2021 May 24;19(6). pii: md19060303. doi: 10.3390/md19060303. [PubMed:34073984 ]
  4. Fazal A, Webb ME, Seipke RF: The Desotamide Family of Antibiotics. Antibiotics (Basel). 2020 Jul 27;9(8). pii: antibiotics9080452. doi: 10.3390/antibiotics9080452. [PubMed:32727132 ]
  5. Ding W, Dong Y, Ju J, Li Q: The roles of genes associated with regulation, transportation, and macrocyclization in desotamide biosynthesis in Streptomyces scopuliridis SCSIO ZJ46. Appl Microbiol Biotechnol. 2020 Mar;104(6):2603-2610. doi: 10.1007/s00253-020-10414-4. Epub 2020 Jan 31. [PubMed:32002605 ]
  6. Tsutsumi LS, Elmore JM, Dang UT, Wallace MJ, Marreddy R, Lee RB, Tan GT, Hurdle JG, Lee RE, Sun D: Solid-Phase Synthesis and Antibacterial Activity of Cyclohexapeptide Wollamide B Analogs. ACS Comb Sci. 2018 Mar 12;20(3):172-185. doi: 10.1021/acscombsci.7b00189. Epub 2018 Feb 20. [PubMed:29431987 ]
  7. Tsutsumi LS, Tan GT, Sun D: Solid-phase synthesis of cyclic hexapeptides wollamides A, B and desotamide B. Tetrahedron Lett. 2017 Jul 5;58(27):2675-2680. doi: 10.1016/j.tetlet.2017.05.084. Epub 2017 May 25. [PubMed:29129945 ]
  8. Chen YX, Liu C, Liu N, Wu Y, Zhao QJ, Hu HG, Li X, Zou Y: Total Synthesis and Antibacterial Study of Cyclohexapeptides Desotamide B, Wollamide B and Their Analogs. Chem Biodivers. 2018 Jan;15(1). doi: 10.1002/cbdv.201700414. Epub 2017 Dec 27. [PubMed:29125222 ]
  9. Kamjam M, Sivalingam P, Deng Z, Hong K: Deep Sea Actinomycetes and Their Secondary Metabolites. Front Microbiol. 2017 May 1;8:760. doi: 10.3389/fmicb.2017.00760. eCollection 2017. [PubMed:28507537 ]
  10. Li Q, Qin X, Liu J, Gui C, Wang B, Li J, Ju J: Deciphering the Biosynthetic Origin of L-allo-Isoleucine. J Am Chem Soc. 2016 Jan 13;138(1):408-15. doi: 10.1021/jacs.5b11380. Epub 2015 Dec 28. [PubMed:26669414 ]
  11. LOTUS database [Link]