NP-MRD: Showing NP-Card for 3-(1h-indol-3-ylmethyl)-1-methylindole (NP0274641)

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Record Information

Version

2.0

Created at

2022-09-08 22:06:36 UTC

Updated at

2022-09-08 22:06:37 UTC

NP-MRD ID

NP0274641

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-(1h-indol-3-ylmethyl)-1-methylindole

Description

CHEMBL4066500 belongs to the class of organic compounds known as n-alkylindoles. N-alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 1-position. 3-(1h-indol-3-ylmethyl)-1-methylindole is found in Arundo donax. CHEMBL4066500 is an extremely weak acidic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 39  0  0  0  0  0  0  0  0999 V2000
   -2.9172   -1.1264   -2.6561 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2223   -0.3449   -1.6375 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1175    0.3884   -1.7116 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8185    0.9610   -0.4967 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3145    1.8265   -0.1462 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4128    1.1340    0.5638 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6703    1.1365    1.9336 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7509    0.3818    2.1930 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2491   -0.1426    1.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3172   -0.9570    0.7480 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5761   -1.3219   -0.5487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7451   -0.8538   -1.5379 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6834   -0.0443   -1.2535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4095    0.3300    0.0283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8158    0.5455    0.3831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0338    0.8063    1.7284 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1415    0.2315    2.3151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0292   -0.5798    1.6357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7638   -0.8068    0.2998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6648   -0.2583   -0.3536 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9131   -2.1998   -2.3386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9869   -0.8052   -2.7385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4441   -0.9963   -3.6415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5285    0.5190   -2.6212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0219    2.6971    0.4852 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6767    2.3294   -1.0901 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1121    1.6538    2.6995 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2245    0.1626    3.1092 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9496   -1.3008    1.5643 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4201   -1.9657   -0.7802 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9232   -1.1203   -2.5738 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0077    0.3406   -2.0255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3426    1.4395    2.2662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3410    0.4150    3.3593 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9011   -1.0316    2.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4390   -1.4430   -0.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
  4 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20  2  1  0
 14  6  1  0
 20 15  1  0
 14  9  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  5 25  1  0
  5 26  1  0
  7 27  1  0
  8 28  1  0
 10 29  1  0
 11 30  1  0
 12 31  1  0
 13 32  1  0
 16 33  1  0
 17 34  1  0
 18 35  1  0
 19 36  1  0
M  END


  Mrv1533004181502492D          

 20 23  0  0  0  0            999 V2000
    3.3988   -2.9672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6538   -2.1826    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1688   -1.5151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6538   -0.8477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3988   -0.0631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5919    0.1085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9788   -0.4436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2643   -0.0311    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4358    0.7759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9509    1.4433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2864    2.1970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1069    2.2832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5919    1.6158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2563    0.8621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4384   -1.1026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1529   -0.6901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8673   -1.1026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8673   -1.9276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1529   -2.3401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4384   -1.9276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  6 14  1  0  0  0  0
  9 14  1  0  0  0  0
  4 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
  2 20  1  0  0  0  0
 15 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0274641

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN1C=C(CC2=CNC3=CC=CC=C23)C2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C18H16N2/c1-20-12-14(16-7-3-5-9-18(16)20)10-13-11-19-17-8-4-2-6-15(13)17/h2-9,11-12,19H,10H2,1H3

> <INCHI_KEY>
POEXERAQSHGAMH-UHFFFAOYSA-N

> <FORMULA>
C18H16N2

> <MOLECULAR_WEIGHT>
260.34

> <EXACT_MASS>
260.131348523

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
29.67757789886061

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[(1H-indol-3-yl)methyl]-1-methyl-1H-indole

> <ALOGPS_LOGP>
4.79

> <JCHEM_LOGP>
4.486239894666666

> <ALOGPS_LOGS>
-4.61

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.81682816597423

> <JCHEM_POLAR_SURFACE_AREA>
20.72

> <JCHEM_REFRACTIVITY>
82.86490000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.35e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-(1H-indol-3-ylmethyl)-1-methylindole

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 18-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-APR-15         0                                  
HETATM    1  C   UNK     0       6.344  -5.539   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       6.820  -4.074   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0       5.915  -2.828   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.820  -1.582   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.344  -0.118   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.838   0.202   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.694  -0.828   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       2.360  -0.058   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       2.680   1.448   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.775   2.694   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.401   4.101   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.933   4.262   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.838   3.016   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.212   1.609   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.285  -2.058   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.619  -1.288   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.952  -2.058   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.952  -3.598   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.619  -4.368   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.285  -3.598   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   20                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   15                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   14                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    6    9                                                  
CONECT   15    4   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19    2   15                                                  
MASTER        0    0    0    0    0    0    0    0   20    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₁₆N₂

Average Mass

260.3400 Da

Monoisotopic Mass

260.13135 Da

IUPAC Name

3-[(1H-indol-3-yl)methyl]-1-methyl-1H-indole

Traditional Name

3-(1H-indol-3-ylmethyl)-1-methylindole

CAS Registry Number

Not Available

SMILES

CN1C=C(CC2=CNC3=CC=CC=C23)C2=CC=CC=C12

InChI Identifier

InChI=1S/C18H16N2/c1-20-12-14(16-7-3-5-9-18(16)20)10-13-11-19-17-8-4-2-6-15(13)17/h2-9,11-12,19H,10H2,1H3

InChI Key

POEXERAQSHGAMH-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arundo donax	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-alkylindoles. N-alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 1-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

N-alkylindoles

Direct Parent

N-alkylindoles

Alternative Parents

Substituents

N-alkylindole
3-alkylindole
Indole
Benzenoid
Substituted pyrrole
N-methylpyrrole
Heteroaromatic compound
Pyrrole
Azacycle
Organic nitrogen compound
Hydrocarbon derivative
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.79	ALOGPS
logP	4.49	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	16.82	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.72 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	82.86 m³·mol⁻¹	ChemAxon
Polarizability	29.68 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101999730

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-(1h-indol-3-ylmethyl)-1-methylindole (NP0274641)

MOL for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

3D MOL for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

3D SDF for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

3D-SDF for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

PDB for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

3D PDB for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

SMILES for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

INCHI for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

Structure for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)

3D Structure for NP0274641 (3-(1h-indol-3-ylmethyl)-1-methylindole)