NP-MRD: Showing NP-Card for 3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one (NP0274480)

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Record Information

Version

2.0

Created at

2022-09-08 21:53:19 UTC

Updated at

2022-09-08 21:53:20 UTC

NP-MRD ID

NP0274480

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one

Description

Tullidinol belongs to the class of organic compounds known as arylnaphthalene lignans. These are lignans containing the arylnaphthalene skeleton, especially 9-(2H-1,3-benzodioxol-5-yl)-1H,3H-naphtho[2,3-c]furan-1-one or a derivative thereof. Arylnaphthalene lignans occur in nature and exhibit diverse biological activities. 3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one is found in Karwinskia humboldtiana. Tullidinol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161506202D          

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  3 40  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1533004161506202D          

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    5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 11 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 27 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 25 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 23 36  1  0  0  0  0
 36 37  2  0  0  0  0
 20 37  1  0  0  0  0
 37 38  1  0  0  0  0
 19 39  1  0  0  0  0
  8 39  1  0  0  0  0
 39 40  2  0  0  0  0
  3 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0274480

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(OC)=C2C(O)=C3C(C)OC(C)CC3=C(C3=CC=C4C=C5CC(C)(O)CC(=O)C5=C(O)C4=C3O)C2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C32H32O8/c1-14-8-20-24(15(2)40-14)30(35)28-21(10-18(38-4)11-23(28)39-5)27(20)19-7-6-16-9-17-12-32(3,37)13-22(33)25(17)31(36)26(16)29(19)34/h6-7,9-11,14-15,34-37H,8,12-13H2,1-5H3

> <INCHI_KEY>
OFXNQLFWWFUNRK-UHFFFAOYSA-N

> <FORMULA>
C32H32O8

> <MOLECULAR_WEIGHT>
544.6

> <EXACT_MASS>
544.20971799

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
59.061380406672285

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1H,3H,4H-naphtho[2,3-c]pyran-5-yl}-3-methyl-1,2,3,4-tetrahydroanthracen-1-one

> <ALOGPS_LOGP>
4.27

> <JCHEM_LOGP>
5.129845940666666

> <ALOGPS_LOGS>
-5.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.346524260597134

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.6489268658262795

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9317354156906514

> <JCHEM_POLAR_SURFACE_AREA>
125.68

> <JCHEM_REFRACTIVITY>
151.10039999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.35e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1H,3H,4H-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       9.336  -0.770   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      10.669   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.669  -3.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.003  -2.310   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      12.003  -0.770   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      13.337  -3.080   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.670  -2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.670  -0.770   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      16.004  -3.080   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      17.338  -5.390   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.670  -5.390   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.337  -4.620   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.003  -5.390   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.003  -6.930   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.003 -11.550   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.669 -12.320   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.669 -13.860   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.336 -14.630   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.326 -15.810   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       8.346 -15.810   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       8.002 -13.860   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.002 -12.320   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       6.668 -11.550   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       9.336 -11.550   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.336 -10.010   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       8.002  -9.240   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       9.336  -6.930   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      10.669  -4.620   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       9.336  -5.390   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   40                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    8                                                  
CONECT    6    5    7                                                       
CONECT    7    6                                                            
CONECT    8    5    9   39                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   18                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   11   19                                                  
CONECT   19   18   20   39                                                  
CONECT   20   19   21   37                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   36                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   33                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   29   30                                             
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   27   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   25   34                                                  
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   23   37                                                  
CONECT   37   36   20   38                                                  
CONECT   38   37                                                            
CONECT   39   19    8   40                                                  
CONECT   40   39    3                                                       
MASTER        0    0    0    0    0    0    0    0   40    0   90    0
END

View in JSmol

Synonyms

Value	Source
Karwinskia toxin T-544	MeSH
Toxin 544, karwinskia	MeSH

Chemical Formula

C₃₂H₃₂O₈

Average Mass

544.6000 Da

Monoisotopic Mass

544.20972 Da

IUPAC Name

3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1H,3H,4H-naphtho[2,3-c]pyran-5-yl}-3-methyl-1,2,3,4-tetrahydroanthracen-1-one

Traditional Name

3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1H,3H,4H-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one

CAS Registry Number

Not Available

SMILES

COC1=CC(OC)=C2C(O)=C3C(C)OC(C)CC3=C(C3=CC=C4C=C5CC(C)(O)CC(=O)C5=C(O)C4=C3O)C2=C1

InChI Identifier

InChI=1S/C32H32O8/c1-14-8-20-24(15(2)40-14)30(35)28-21(10-18(38-4)11-23(28)39-5)27(20)19-7-6-16-9-17-12-32(3,37)13-22(33)25(17)31(36)26(16)29(19)34/h6-7,9-11,14-15,34-37H,8,12-13H2,1-5H3

InChI Key

OFXNQLFWWFUNRK-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Karwinskia humboldtiana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as arylnaphthalene lignans. These are lignans containing the arylnaphthalene skeleton, especially 9-(2H-1,3-benzodioxol-5-yl)-1H,3H-naphtho[2,3-c]furan-1-one or a derivative thereof. Arylnaphthalene lignans occur in nature and exhibit diverse biological activities.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Arylnaphthalene lignans

Sub Class

Not Available

Direct Parent

Arylnaphthalene lignans

Alternative Parents

Substituents

Arylnaphthalene lignan skeleton
Anthracene
Naphthopyran
1-naphthol
Benzopyran
Isochromane
Tetralin
2-benzopyran
Anisole
Aryl alkyl ketone
Aryl ketone
Alkyl aryl ether
1-hydroxy-4-unsubstituted benzenoid
Pyran
Benzenoid
Vinylogous acid
Tertiary alcohol
Ketone
Polyol
Organoheterocyclic compound
Oxacycle
Ether
Dialkyl ether
Alcohol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.27	ALOGPS
logP	5.13	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	7.65	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	125.68 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	151.1 m³·mol⁻¹	ChemAxon
Polarizability	59.06 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

99832

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one (NP0274480)

MOL for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

3D MOL for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

3D SDF for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

3D-SDF for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

PDB for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

3D PDB for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

SMILES for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

INCHI for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

Structure for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)

3D Structure for NP0274480 (3,8,9-trihydroxy-7-{10-hydroxy-7,9-dimethoxy-1,3-dimethyl-1h,3h,4h-naphtho[2,3-c]pyran-5-yl}-3-methyl-2,4-dihydroanthracen-1-one)