NP-MRD: Showing NP-Card for (-)-trachelogenin (NP0273595)

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Record Information

Version

2.0

Created at

2022-09-08 20:41:26 UTC

Updated at

2022-09-08 20:41:26 UTC

NP-MRD ID

NP0273595

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-trachelogenin

Description

(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-hydroxy-3-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-2-one belongs to the class of organic compounds known as dibenzylbutyrolactone lignans. These are lignan compounds containing a 3,4-dibenzyloxolan-2-one moiety. (-)-trachelogenin is found in Schisandra lancifolia and Trachelospermum asiaticum. Based on a literature review very few articles have been published on (3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-hydroxy-3-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082222412D          

 28 30  0  0  1  0            999 V2000
    3.8634    2.0109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6085    1.2263    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8015    1.0548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5466    0.2701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7396    0.0986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4847   -0.6860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367   -1.2991    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5887   -0.6860    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3693   -1.7840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5846   -1.5291    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6242   -2.5687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4492   -2.5687    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7041   -1.7840    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4888   -1.5291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1019   -2.0811    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8865   -1.8262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4996   -2.3782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3281   -3.1852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9411   -3.7372    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7258   -3.4823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5434   -3.4401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3719   -4.2471    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5873   -4.5020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9303   -2.8881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1876    0.7117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4425    1.4963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2495    1.6679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5044    2.4525    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  2  0  0  0  0
 15 24  1  0  0  0  0
  5 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
  3 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END

     RDKit          3D

 52 54  0  0  0  0  0  0  0  0999 V2000
    6.2336    1.6925    1.5436 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5360    0.5505    0.8006 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5954   -0.3864    0.3944 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2380   -0.2549    0.7059 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3148   -1.1934    0.2956 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8567   -1.0594    0.6259 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1185   -0.2963   -0.4316 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1893   -0.9006   -1.6786 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6214    1.0944   -0.5078 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6215    1.5126   -1.1702 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8068    1.8880    0.2787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1559    1.0900    0.9490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3172   -0.0826    0.0120 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2002    0.3208   -1.1224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6169    0.5453   -0.7430 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1239    1.7959   -0.4076 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4375    2.0096   -0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2947    0.9347   -0.0070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6242    1.0862    0.3517 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1939    2.3217    0.7009 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8305   -0.3201   -0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6875   -1.4271   -0.3028 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2237   -2.7180   -0.6342 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5197   -0.5260   -0.6956 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7697   -2.2713   -0.4346 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1017   -2.4363   -0.7621 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9810   -1.4763   -0.3313 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3235   -1.6248   -0.6506 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4392    1.5414    2.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1211    2.0734    2.0751 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8766    2.5415    0.9031 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9378    0.6066    1.2787 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7524   -0.6054    1.6284 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4337   -2.0905    0.7171 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0885   -0.8441   -2.0344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0972    1.5872    1.1643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2853    0.7406    1.9324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7049   -0.9806    0.5470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1255   -0.4034   -1.9634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8254    1.3171   -1.4945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4314    2.6492   -0.4494 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7777    3.0039    0.2087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3019    2.2407    0.5609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8771    3.1418    0.0114 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0253    2.6090    1.7425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9878   -2.7185   -1.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9623   -3.4771   -0.3386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2866   -2.9161   -0.0445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1246   -1.5111   -0.9591 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0673   -3.0211   -0.7684 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4183   -3.2964   -1.3368 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0259   -0.9650   -0.3712 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  6
  7 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 18 21  1  0
 21 22  1  0
 22 23  1  0
 21 24  2  0
 13 12  1  0
 12 11  1  0
 11  9  1  0
  9 10  2  0
  5 25  2  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 27  3  1  0
  9  7  1  0
 24 15  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  4 32  1  0
  6 33  1  0
  6 34  1  0
  8 35  1  0
 13 38  1  1
 14 39  1  0
 14 40  1  0
 16 41  1  0
 17 42  1  0
 20 43  1  0
 20 44  1  0
 20 45  1  0
 23 46  1  0
 23 47  1  0
 23 48  1  0
 24 49  1  0
 12 36  1  0
 12 37  1  0
 25 50  1  0
 26 51  1  0
 28 52  1  0
M  END


  Mrv1652309082222412D          

 28 30  0  0  1  0            999 V2000
    3.8634    2.0109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6085    1.2263    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8015    1.0548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5466    0.2701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7396    0.0986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4847   -0.6860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367   -1.2991    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5887   -0.6860    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3693   -1.7840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5846   -1.5291    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6242   -2.5687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4492   -2.5687    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7041   -1.7840    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4888   -1.5291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1019   -2.0811    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8865   -1.8262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4996   -2.3782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3281   -3.1852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9411   -3.7372    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7258   -3.4823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5434   -3.4401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3719   -4.2471    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5873   -4.5020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9303   -2.8881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1876    0.7117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4425    1.4963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2495    1.6679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5044    2.4525    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  2  0  0  0  0
 15 24  1  0  0  0  0
  5 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
  3 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0273595

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(C[C@@]2(O)[C@H](CC3=CC=C(OC)C(OC)=C3)COC2=O)=CC=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C21H24O7/c1-25-17-7-5-13(9-19(17)27-3)8-15-12-28-20(23)21(15,24)11-14-4-6-16(22)18(10-14)26-2/h4-7,9-10,15,22,24H,8,11-12H2,1-3H3/t15-,21-/m1/s1

> <INCHI_KEY>
YFVZKLQNMNKWSB-QVKFZJNVSA-N

> <FORMULA>
C21H24O7

> <MOLECULAR_WEIGHT>
388.416

> <EXACT_MASS>
388.152203113

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
40.338208078145996

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-hydroxy-3-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-2-one

> <JCHEM_LOGP>
2.5759007109999996

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.032142988733847

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.939412131580635

> <JCHEM_PKA_STRONGEST_BASIC>
-4.1112111780153855

> <JCHEM_POLAR_SURFACE_AREA>
94.45000000000002

> <JCHEM_REFRACTIVITY>
101.5719

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-hydroxy-3-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       7.212   3.754   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.736   2.289   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       5.230   1.969   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.754   0.504   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.247   0.184   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.771  -1.281   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.802  -2.425   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.832  -1.281   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.556  -3.330   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.091  -2.854   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       3.032  -4.795   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.572  -4.795   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.048  -3.330   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.512  -2.854   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.657  -3.885   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.121  -3.409   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.266  -4.439   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.946  -5.946   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      11.090  -6.976   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      12.555  -6.500   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.481  -6.422   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       8.161  -7.928   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.696  -8.404   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.337  -5.391   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.217   1.329   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.693   2.793   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.199   3.113   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       4.675   4.578   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   27                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   25                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9   13                                             
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    7   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   24                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22   24                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21   15                                                       
CONECT   25    5   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26    3   28                                                  
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₄O₇

Average Mass

388.4160 Da

Monoisotopic Mass

388.15220 Da

IUPAC Name

(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-hydroxy-3-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-2-one

Traditional Name

(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-hydroxy-3-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-2-one

CAS Registry Number

Not Available

SMILES

COC1=CC(C[C@@]2(O)[C@H](CC3=CC=C(OC)C(OC)=C3)COC2=O)=CC=C1O

InChI Identifier

InChI=1S/C21H24O7/c1-25-17-7-5-13(9-19(17)27-3)8-15-12-28-20(23)21(15,24)11-14-4-6-16(22)18(10-14)26-2/h4-7,9-10,15,22,24H,8,11-12H2,1-3H3/t15-,21-/m1/s1

InChI Key

YFVZKLQNMNKWSB-QVKFZJNVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Schisandra lancifolia	LOTUS Database	35616633
Trachelospermum asiaticum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dibenzylbutyrolactone lignans. These are lignan compounds containing a 3,4-dibenzyloxolan-2-one moiety.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Furanoid lignans

Sub Class

Tetrahydrofuran lignans

Direct Parent

Dibenzylbutyrolactone lignans

Alternative Parents

Substituents

Dibenzylbutyrolactone
Lignan lactone
Methoxyphenol
O-dimethoxybenzene
Dimethoxybenzene
Phenoxy compound
Anisole
Phenol ether
Methoxybenzene
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Monocyclic benzene moiety
Benzenoid
Gamma butyrolactone
Oxolane
Tertiary alcohol
Carboxylic acid ester
Lactone
Organoheterocyclic compound
Ether
Oxacycle
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organic oxygen compound
Alcohol
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.58	ChemAxon
pKa (Strongest Acidic)	9.94	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	94.45 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	101.57 m³·mol⁻¹	ChemAxon
Polarizability	40.34 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

113609108

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14309855

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (-)-trachelogenin (NP0273595)

MOL for NP0273595 ((-)-trachelogenin)

3D MOL for NP0273595 ((-)-trachelogenin)

3D SDF for NP0273595 ((-)-trachelogenin)

3D-SDF for NP0273595 ((-)-trachelogenin)

PDB for NP0273595 ((-)-trachelogenin)

3D PDB for NP0273595 ((-)-trachelogenin)

SMILES for NP0273595 ((-)-trachelogenin)

INCHI for NP0273595 ((-)-trachelogenin)

Structure for NP0273595 ((-)-trachelogenin)

3D Structure for NP0273595 ((-)-trachelogenin)