NP-MRD: Showing NP-Card for (2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol (NP0273047)

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Record Information

Version

2.0

Created at

2022-09-08 19:56:35 UTC

Updated at

2022-09-08 19:56:36 UTC

NP-MRD ID

NP0273047

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol

Description

Epicubebol glycoside belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol is found in Calendula arvensis. (2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol was first documented in 1990 (PMID: 1965654). Based on a literature review very few articles have been published on epicubebol glycoside.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082221562D          

 26 29  0  0  1  0            999 V2000
    3.7452    1.2212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9211    1.1815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4747    1.8753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5435    0.4480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9899   -0.2458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6122   -0.9792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7882   -1.0189    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4105   -1.7524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3418   -0.3251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8199   -0.9641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0509   -0.6652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0976    0.1585    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7264    0.1188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0280    0.9739    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7970    1.2728    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9226    2.0882    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6915    2.3871    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8171    3.2025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.8706    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1038    2.1695    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2092    1.0552    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8526    0.5388    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4403    0.7563    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3147   -0.0591    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8954    0.3687    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7194    0.4084    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  1  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 15 23  1  0  0  0  0
 23 24  1  6  0  0  0
 12 25  1  0  0  0  0
 25  9  1  1  0  0  0
 26 25  1  1  0  0  0
  4 26  1  0  0  0  0
  9 26  1  0  0  0  0
M  END

     RDKit          3D

 62 65  0  0  0  0  0  0  0  0999 V2000
   -3.9632    2.6326    0.0973 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4574    1.2304   -0.1863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7812    1.3255   -0.8798 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4324    0.4438   -0.9906 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8533   -0.9321   -1.3007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1887   -2.0143   -0.5254 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7549   -1.5788    0.8341 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0002   -2.7576    1.4620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7848   -0.4401    0.6900 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9724   -0.0587    1.8833 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4469   -0.3158    1.4078 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3677    0.1721   -0.0211 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3813    1.6864   -0.0868 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3915   -0.3863   -0.7641 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6429   -0.0654   -0.2993 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2590    0.7156   -1.2613 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4953    1.1821   -0.9384 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2233    1.4343   -2.2694 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3585    0.3779   -0.0793 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3509   -0.2902   -0.8371 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6965   -0.6735    0.7585 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5610   -1.6581    1.1795 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5551   -1.2528   -0.0892 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9732   -2.3352    0.5034 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9712   -0.2893   -0.5360 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1287    0.5861   -0.2785 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4021    2.9834   -0.7917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8541    3.2850    0.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3447    2.6696    1.0242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6284    0.7508    0.7982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3799    2.0962   -0.3499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6994    1.6745   -1.9307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3835    0.3828   -0.8026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3331    1.0091   -1.9621 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7120   -1.1757   -2.3954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9674   -1.0458   -1.1519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3435   -2.4806   -1.1121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9051   -2.8762   -0.3762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6428   -1.3435    1.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7198   -3.6243    1.3801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1482   -3.0048    0.8259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7687   -2.5801    2.5186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2051   -0.6399    2.7982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0548    1.0166    2.1346 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1686    0.2145    2.0256 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5622   -1.4201    1.3933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1403    1.9868   -1.0227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0163    2.1652    0.8169 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4271    2.0658   -0.2031 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6008    0.5856    0.6237 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3640    2.2112   -0.5025 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8726    2.3384   -2.7653 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2935    1.5673   -2.0078 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1605    0.5158   -2.9126 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9481    1.0217    0.6317 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9574   -0.7882   -0.2276 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1829   -0.1734    1.6188 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2200   -2.1003    2.0093 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0453   -1.4993   -1.0701 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2829   -3.1783    0.0782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9696   -0.9941   -1.3614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8818    1.6454   -0.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  1
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  6
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 12 25  1  0
 25 26  1  0
 26  4  1  0
 25  9  1  0
 26  9  1  0
 23 15  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  3 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  6
  5 35  1  0
  5 36  1  0
  6 37  1  0
  6 38  1  0
  7 39  1  1
  8 40  1  0
  8 41  1  0
  8 42  1  0
 10 43  1  0
 10 44  1  0
 11 45  1  0
 11 46  1  0
 13 47  1  0
 13 48  1  0
 13 49  1  0
 15 50  1  1
 17 51  1  1
 18 52  1  0
 18 53  1  0
 18 54  1  0
 19 55  1  1
 20 56  1  0
 21 57  1  1
 22 58  1  0
 23 59  1  6
 24 60  1  0
 25 61  1  6
 26 62  1  1
M  END


  Mrv1652309082221562D          

 26 29  0  0  1  0            999 V2000
    3.7452    1.2212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9211    1.1815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4747    1.8753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5435    0.4480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9899   -0.2458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6122   -0.9792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7882   -1.0189    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4105   -1.7524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3418   -0.3251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8199   -0.9641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0509   -0.6652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0976    0.1585    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7264    0.1188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0280    0.9739    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7970    1.2728    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9226    2.0882    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6915    2.3871    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8171    3.2025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.8706    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1038    2.1695    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2092    1.0552    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8526    0.5388    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4403    0.7563    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3147   -0.0591    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8954    0.3687    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7194    0.4084    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  1  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 15 23  1  0  0  0  0
 23 24  1  6  0  0  0
 12 25  1  0  0  0  0
 25  9  1  1  0  0  0
 26 25  1  1  0  0  0
  4 26  1  0  0  0  0
  9 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0273047

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@H]1CC[C@@H](C)C23CC[C@@](C)(O[C@@H]4O[C@H](C)[C@H](O)[C@H](O)[C@H]4O)[C@@H]2[C@@H]13

> <INCHI_IDENTIFIER>
InChI=1S/C21H36O5/c1-10(2)13-7-6-11(3)21-9-8-20(5,18(21)14(13)21)26-19-17(24)16(23)15(22)12(4)25-19/h10-19,22-24H,6-9H2,1-5H3/t11-,12-,13+,14-,15+,16+,17-,18+,19+,20-,21?/m1/s1

> <INCHI_KEY>
BKKOWVSRAGJQRQ-QAASZDOASA-N

> <FORMULA>
C21H36O5

> <MOLECULAR_WEIGHT>
368.514

> <EXACT_MASS>
368.256274259

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
41.45746256685971

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4S,5R,6R)-2-{[(4R,5R,6R,7S,10R)-4,10-dimethyl-7-(propan-2-yl)tricyclo[4.4.0.0^{1,5}]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol

> <JCHEM_LOGP>
2.454576739999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.272388845790925

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.223953098540646

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6121828032954006

> <JCHEM_POLAR_SURFACE_AREA>
79.15

> <JCHEM_REFRACTIVITY>
97.46960000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5R,6R)-2-{[(4R,5R,6R,7S,10R)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0^{1,5}]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       6.991   2.280   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.453   2.206   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.619   3.501   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.748   0.836   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.581  -0.459   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.876  -1.828   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.338  -1.902   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.633  -3.271   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.505  -0.607   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.530  -1.800   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.095  -1.242   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.182   0.296   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.356   0.222   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.052   1.818   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.488   2.376   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.722   3.898   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -3.158   4.456   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.392   5.978   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.358   3.492   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -5.794   4.050   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -4.124   1.970   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -5.325   1.006   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -2.689   1.412   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -2.454  -0.110   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       1.671   0.688   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.210   0.762   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   26                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   25   26                                             
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   25                                             
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   23                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   15   24                                                  
CONECT   24   23                                                            
CONECT   25   12    9   26                                                  
CONECT   26   25    4    9                                                  
MASTER        0    0    0    0    0    0    0    0   26    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₆O₅

Average Mass

368.5140 Da

Monoisotopic Mass

368.25627 Da

IUPAC Name

(2S,3R,4S,5R,6R)-2-{[(4R,5R,6R,7S,10R)-4,10-dimethyl-7-(propan-2-yl)tricyclo[4.4.0.0^{1,5}]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol

Traditional Name

(2S,3R,4S,5R,6R)-2-{[(4R,5R,6R,7S,10R)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0^{1,5}]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CC(C)[C@@H]1CC[C@@H](C)C23CC[C@@](C)(O[C@@H]4O[C@H](C)[C@H](O)[C@H](O)[C@H]4O)[C@@H]2[C@@H]13

InChI Identifier

InChI=1S/C21H36O5/c1-10(2)13-7-6-11(3)21-9-8-20(5,18(21)14(13)21)26-19-17(24)16(23)15(22)12(4)25-19/h10-19,22-24H,6-9H2,1-5H3/t11-,12-,13+,14-,15+,16+,17-,18+,19+,20-,21?/m1/s1

InChI Key

BKKOWVSRAGJQRQ-QAASZDOASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Calendula arvensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Cubebane sesquiterpenoid
Hexose monosaccharide
O-glycosyl compound
Glycosyl compound
Oxane
Monosaccharide
Secondary alcohol
Organoheterocyclic compound
Polyol
Acetal
Oxacycle
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.45	ChemAxon
pKa (Strongest Acidic)	12.22	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	79.15 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	97.47 m³·mol⁻¹	ChemAxon
Polarizability	41.46 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23339924

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44567052

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

De Tommasi N, Pizza C, Conti C, Orsi N, Stein ML: Structure and in vitro antiviral activity of sesquiterpene glycosides from Calendula arvensis. J Nat Prod. 1990 Jul-Aug;53(4):830-5. doi: 10.1021/np50070a009. [PubMed:1965654 ]
LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol (NP0273047)

MOL for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

3D MOL for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

3D SDF for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

3D-SDF for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

PDB for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

3D PDB for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

SMILES for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

INCHI for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

Structure for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)

3D Structure for NP0273047 ((2s,3r,4s,5r,6r)-2-{[(4r,5r,6r,7s,10r)-7-isopropyl-4,10-dimethyltricyclo[4.4.0.0¹,⁵]decan-4-yl]oxy}-6-methyloxane-3,4,5-triol)