NP-MRD: Showing NP-Card for 8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one (NP0272789)

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Record Information

Version

2.0

Created at

2022-09-08 19:34:23 UTC

Updated at

2022-09-08 19:34:23 UTC

NP-MRD ID

NP0272789

Secondary Accession Numbers

None

Natural Product Identification

Common Name

8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one

Description

Spionoside B belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol. 8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one is found in Capparis spinosa. Based on a literature review very few articles have been published on Spionoside B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082221342D          

 28 30  0  0  1  0            999 V2000
    2.3149   -2.8813    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5858   -2.1020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0464   -1.4778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3624   -0.5690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3941   -0.0001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3419    0.4964    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1624    0.9268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8970    1.7481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5174    0.4124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5174   -0.4126    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1624   -0.9270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8082   -1.7090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9667   -0.7434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3247   -0.0001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2378    0.0913    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9667    0.7432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3961   -1.9470    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9355   -2.5713    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7458   -2.4162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2852   -3.0405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0955   -2.8855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3665   -2.1062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0143   -3.8197    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5537   -4.4440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2040   -3.9747    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9331   -4.7540    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6646   -3.3505    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8543   -3.5055    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  5 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  7 16  1  0  0  0  0
  2 17  1  0  0  0  0
 18 17  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 18 27  1  0  0  0  0
 27 28  1  1  0  0  0
M  END

     RDKit          3D

 58 60  0  0  0  0  0  0  0  0999 V2000
   -0.5607   -3.2806   -0.5177 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4715   -1.7902   -0.2974 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7587   -1.4325    0.4562 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7463   -0.7537   -0.1159 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9685   -0.3923    0.6147 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2270   -1.2268    1.6715 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9639    1.0748    1.0620 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2526    1.2698    2.3574 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4444    1.3489    1.1327 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0993    0.3616    0.4503 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2006   -0.3631   -0.2865 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7290   -1.7316   -0.5769 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9082    0.3935   -1.5644 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3112    1.7117   -1.2390 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5745    2.6686   -1.9393 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3999    1.8810   -0.0755 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5725   -1.2762    0.3589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2786   -0.3463   -0.4286 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3448    0.8209    0.2702 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5393    1.4762    0.2497 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4332    2.6467    1.2373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6127    3.3768    1.2837 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7133    0.6457    0.7129 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7867    0.9369   -0.1364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4457   -0.8462    0.5589 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6259   -1.2121    1.6224 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6187   -0.9750   -0.7241 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2789   -0.3399   -1.7662 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7439   -3.8407    0.4117 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4544   -3.6028   -0.8828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2601   -3.4795   -1.3284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4321   -1.3206   -1.3027 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8843   -1.7154    1.4931 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5846   -0.4839   -1.1670 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9185   -2.1425    1.4830 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2127    0.2913    2.8836 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7768    2.0387    2.9355 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2058    1.5676    2.1325 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7171    2.3781    0.8452 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7241    1.2471    2.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6863   -1.8871    0.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9628   -1.8135   -1.6615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0365   -2.5434   -0.3381 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8997    0.4992   -2.0870 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2773   -0.1932   -2.2708 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3908    1.5305   -0.3973 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3679    2.9557    0.2487 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7419   -0.2728   -1.4004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7363    1.9548   -0.7385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6073    3.3148    0.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2327    2.2477    2.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2546    2.9241    1.9168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0217    0.8644    1.7463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4387    0.1816   -0.1502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3766   -1.4106    0.5023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0247   -0.9855    2.4961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4927   -2.0525   -0.9123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0373   -0.8985   -2.0491 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 20 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  1
  5  7  1  0
  7  8  1  1
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  6
 11 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 27 18  1  0
 11  5  1  0
 16  7  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  2 32  1  6
 18 48  1  6
 20 49  1  6
 21 50  1  0
 21 51  1  0
 22 52  1  0
 23 53  1  1
 24 54  1  0
 25 55  1  6
 26 56  1  0
 27 57  1  6
 28 58  1  0
  3 33  1  0
  4 34  1  0
  6 35  1  0
  8 36  1  0
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 12 41  1  0
 12 42  1  0
 12 43  1  0
 13 44  1  0
 13 45  1  0
 16 46  1  0
 16 47  1  0
M  END


  Mrv1652309082221342D          

 28 30  0  0  1  0            999 V2000
    2.3149   -2.8813    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5858   -2.1020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0464   -1.4778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3624   -0.5690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3941   -0.0001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3419    0.4964    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1624    0.9268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8970    1.7481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5174    0.4124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5174   -0.4126    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1624   -0.9270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8082   -1.7090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9667   -0.7434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3247   -0.0001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2378    0.0913    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9667    0.7432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3961   -1.9470    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9355   -2.5713    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7458   -2.4162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2852   -3.0405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0955   -2.8855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3665   -2.1062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0143   -3.8197    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5537   -4.4440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2040   -3.9747    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9331   -4.7540    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6646   -3.3505    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8543   -3.5055    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  5 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  7 16  1  0  0  0  0
  2 17  1  0  0  0  0
 18 17  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 18 27  1  0  0  0  0
 27 28  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0272789

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)\C=C\C1(O)C2(C)COC1(C)CC(=O)C2

> <INCHI_IDENTIFIER>
InChI=1S/C19H30O9/c1-10(27-16-15(24)14(23)13(22)12(8-20)28-16)4-5-19(25)17(2)6-11(21)7-18(19,3)26-9-17/h4-5,10,12-16,20,22-25H,6-9H2,1-3H3/b5-4+/t10?,12-,13-,14+,15-,16-,17?,18?,19?/m1/s1

> <INCHI_KEY>
AQDQRSAVDNFBEA-HKMVGJDTSA-N

> <FORMULA>
C19H30O9

> <MOLECULAR_WEIGHT>
402.44

> <EXACT_MASS>
402.188982546

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
40.96896035083343

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
8-hydroxy-1,5-dimethyl-8-[(1E)-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one

> <JCHEM_LOGP>
-1.5064158949999993

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.792132393049016

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.125201136051627

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083681947399

> <JCHEM_POLAR_SURFACE_AREA>
145.91000000000003

> <JCHEM_REFRACTIVITY>
96.22950000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
8-hydroxy-1,5-dimethyl-8-[(1E)-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       4.321  -5.378   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.827  -3.924   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.820  -2.759   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.410  -1.062   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.602  -0.000   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       4.371   0.927   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.170   1.730   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.674   3.263   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.966   0.770   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.966  -0.770   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       2.170  -1.730   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.509  -3.190   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.671  -1.388   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.339  -0.000   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       6.044   0.170   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       3.671   1.387   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       6.339  -3.634   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       7.346  -4.800   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.859  -4.510   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       9.866  -5.676   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      11.378  -5.386   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      11.884  -3.932   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       9.360  -7.130   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      10.367  -8.295   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       7.848  -7.420   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       7.342  -8.874   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       6.841  -6.254   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.328  -6.544   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   17                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7   11                                             
CONECT    6    5                                                            
CONECT    7    5    8    9   16                                             
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    5   12   13                                             
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    7                                                       
CONECT   17    2   18                                                       
CONECT   18   17   19   27                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   23                                                  
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   20   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   18   28                                                  
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   60    0
END

View in JSmol

Synonyms

Value	Source
((9S)-Drummondol-9-O-beta-D-glucopyranoside)	MeSH

Chemical Formula

C₁₉H₃₀O₉

Average Mass

402.4400 Da

Monoisotopic Mass

402.18898 Da

IUPAC Name

8-hydroxy-1,5-dimethyl-8-[(1E)-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one

Traditional Name

8-hydroxy-1,5-dimethyl-8-[(1E)-3-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one

CAS Registry Number

Not Available

SMILES

CC(O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)\C=C\C1(O)C2(C)COC1(C)CC(=O)C2

InChI Identifier

InChI=1S/C19H30O9/c1-10(27-16-15(24)14(23)13(22)12(8-20)28-16)4-5-19(25)17(2)6-11(21)7-18(19,3)26-9-17/h4-5,10,12-16,20,22-25H,6-9H2,1-3H3/b5-4+/t10?,12-,13-,14+,15-,16-,17?,18?,19?/m1/s1

InChI Key

AQDQRSAVDNFBEA-HKMVGJDTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Capparis spinosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl glycosides

Direct Parent

Fatty acyl glycosides of mono- and disaccharides

Alternative Parents

Substituents

Fatty acyl glycoside of mono- or disaccharide
Alkyl glycoside
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Oxepane
Monosaccharide
Oxane
Cyclic alcohol
Tetrahydrofuran
Tertiary alcohol
Cyclic ketone
Secondary alcohol
Ketone
Acetal
Dialkyl ether
Ether
Oxacycle
Organoheterocyclic compound
Polyol
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Primary alcohol
Organic oxide
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.5	ChemAxon
pKa (Strongest Acidic)	12.13	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	145.91 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	96.23 m³·mol⁻¹	ChemAxon
Polarizability	40.97 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00048144

Chemspider ID

29814195

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

75536016

PDB ID

Not Available

ChEBI ID

181082

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one (NP0272789)

MOL for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

3D MOL for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

3D SDF for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

3D-SDF for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

PDB for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

3D PDB for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

SMILES for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

INCHI for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

Structure for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)

3D Structure for NP0272789 (8-hydroxy-1,5-dimethyl-8-[(1e)-3-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}but-1-en-1-yl]-6-oxabicyclo[3.2.1]octan-3-one)