NP-MRD: Showing NP-Card for methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate (NP0272656)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-08 19:21:50 UTC

Updated at

2022-09-08 19:21:50 UTC

NP-MRD ID

NP0272656

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate

Description

NSC305730 belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring. methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate is found in Brucea javanica. Based on a literature review very few articles have been published on NSC305730.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082221212D          

 40 44  0  0  1  0            999 V2000
   -0.4916   -2.3635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6777   -1.5598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0746   -0.9968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8342   -0.6748    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065   -1.3057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8166   -0.6124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6829    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0329    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  1  0  0  0
  9  8  1  6  0  0  0
  5  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 17 20  1  0  0  0  0
 10 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 24 23  1  6  0  0  0
  8 24  1  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  2  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 26 34  1  0  0  0  0
 34 35  1  1  0  0  0
 34 36  1  0  0  0  0
 36  8  1  1  0  0  0
 36 37  1  0  0  0  0
 37 38  1  1  0  0  0
 37 39  1  0  0  0  0
  5 39  1  0  0  0  0
 39 40  1  6  0  0  0
M  END

     RDKit          3D

 76 80  0  0  0  0  0  0  0  0999 V2000
    2.2066    4.9263    0.1405 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0452    4.1322    0.2546 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9823    2.8382   -0.3027 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0233    2.4732   -0.8902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2400    2.0095   -0.1792 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2428    2.7487    0.5025 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9945    1.8755    1.2403 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5940    0.4750    0.8532 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0979    0.8043    0.6844 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7672   -0.2834    0.2882 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0243   -0.1297    0.9739 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2514   -0.2207    0.3116 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1657   -0.4427   -0.9025 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4241   -0.0534    1.0826 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6371   -0.1229    0.6362 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8032    0.0892    1.5993 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9378   -0.3928   -0.7788 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5760    0.7901   -1.6281 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5339   -1.7267   -1.2966 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3953   -0.4096   -0.8672 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2377   -1.5757    0.8721 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8332   -2.6595    0.5948 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8695   -1.6105    1.6942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6925   -0.4977    1.9649 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1370   -0.9520    2.0797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4295   -1.6912    0.8095 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6486   -2.5103    0.8506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1926   -2.9763    2.1352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2664   -2.8348   -0.2668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4098   -3.6060   -0.1908 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7551   -2.3884   -1.5738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3925   -2.5972   -2.6080 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4572   -1.6843   -1.6048 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4334   -0.7384   -0.3958 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6739    0.0305   -0.4133 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1339   -0.0186   -0.4280 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0417    0.9557   -1.5717 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1052    1.8279   -1.6795 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7723    1.7659   -1.5490 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2314    1.1891   -2.3526 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8506    5.9611   -0.1012 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7708    4.5945   -0.7536 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7951    4.9727    1.0568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0517    2.0748    1.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6266    1.9860    2.3092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2114    1.1772    1.6944 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9823   -0.4415   -0.7868 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3351    0.1579    2.1726 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5743   -0.6542    1.3752 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4440    0.0633    2.6313 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2177    1.0954    1.4107 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0780    0.5055   -2.5929 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9830    1.5672   -1.0681 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4855    1.3698   -1.9636 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4547   -2.3737   -1.5080 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9570   -2.3593   -0.5903 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0842   -1.6265   -2.3041 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6607   -1.3298   -0.5592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4129   -0.0326    2.9346 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3024   -1.6196    2.9259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7495   -0.0259    2.1298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5753   -2.3831    0.6207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0256   -3.7133    1.9803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6170   -2.1677    2.7616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4228   -3.5547    2.7212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3203   -3.2416    0.0831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2863   -1.1353   -2.5365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6371   -2.4302   -1.4194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2009   -0.0226   -1.4149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6745    1.0749   -0.1418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4291   -0.4475    0.2832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3915   -0.8252   -0.7354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9968    0.4044   -2.5401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4513    1.9147   -2.6020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9628    2.7664   -2.0113 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7544    1.8905   -2.8372 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  5  3  1  6
  5  6  1  0
  6  7  1  0
  8  7  1  1
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 17 19  1  0
 17 20  1  0
 10 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  2  0
 29 30  1  0
 29 31  1  0
 31 32  2  0
 31 33  1  0
 33 34  1  0
 34 35  1  1
 34 36  1  0
 36 37  1  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
  9  5  1  0
 34 26  1  0
 39  5  1  0
 24  8  1  0
 36  8  1  0
  1 41  1  0
  1 42  1  0
  1 43  1  0
  7 44  1  0
  7 45  1  0
  9 46  1  1
 10 47  1  6
 14 48  1  0
 16 49  1  0
 16 50  1  0
 16 51  1  0
 18 52  1  0
 18 53  1  0
 18 54  1  0
 19 55  1  0
 19 56  1  0
 19 57  1  0
 20 58  1  0
 24 59  1  1
 25 60  1  0
 25 61  1  0
 26 62  1  6
 28 63  1  0
 28 64  1  0
 28 65  1  0
 30 66  1  0
 33 67  1  0
 33 68  1  0
 35 69  1  0
 35 70  1  0
 35 71  1  0
 36 72  1  6
 37 73  1  6
 38 74  1  0
 39 75  1  6
 40 76  1  0
M  END


  Mrv1652309082221212D          

 40 44  0  0  1  0            999 V2000
   -0.4916   -2.3635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6777   -1.5598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0746   -0.9968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8342   -0.6748    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065   -1.3057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8166   -0.6124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6829    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0329    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  1  0  0  0
  9  8  1  6  0  0  0
  5  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 17 20  1  0  0  0  0
 10 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 24 23  1  6  0  0  0
  8 24  1  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  2  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 26 34  1  0  0  0  0
 34 35  1  1  0  0  0
 34 36  1  0  0  0  0
 36  8  1  1  0  0  0
 36 37  1  0  0  0  0
 37 38  1  1  0  0  0
 37 39  1  0  0  0  0
  5 39  1  0  0  0  0
 39 40  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0272656

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C12OC[C@@]34[C@H]1[C@@H](OC(=O)\C=C(\C)C(C)(C)O)C(=O)O[C@@H]3C[C@H]1C(C)=C(O)C(=O)C[C@]1(C)[C@H]4[C@@H](O)[C@@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C28H36O12/c1-11(25(3,4)36)7-16(30)40-19-21-27-10-38-28(21,24(35)37-6)22(33)18(32)20(27)26(5)9-14(29)17(31)12(2)13(26)8-15(27)39-23(19)34/h7,13,15,18-22,31-33,36H,8-10H2,1-6H3/b11-7-/t13-,15+,18+,19+,20+,21+,22-,26-,27+,28?/m0/s1

> <INCHI_KEY>
KCVFVYXSNLKEHU-CRDYEVGZSA-N

> <FORMULA>
C28H36O12

> <MOLECULAR_WEIGHT>
564.584

> <EXACT_MASS>
564.220676599

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
56.40926695273797

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl (1R,2S,3R,6R,8R,13S,14R,15R,16S)-10,15,16-trihydroxy-3-{[(2Z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0^{1,6}.0^{2,17}.0^{8,13}]nonadec-9-ene-17-carboxylate

> <JCHEM_LOGP>
-0.34532111366666884

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.740517627203236

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.640907591374773

> <JCHEM_PKA_STRONGEST_BASIC>
-2.940885416587782

> <JCHEM_POLAR_SURFACE_AREA>
186.11999999999998

> <JCHEM_REFRACTIVITY>
135.749

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,2S,3R,6R,8R,13S,14R,15R,16S)-10,15,16-trihydroxy-3-{[(2Z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0^{1,6}.0^{2,17}.0^{8,13}]nonadec-9-ene-17-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.918  -4.412   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -1.265  -2.912   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -0.139  -1.861   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.557  -1.260   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       3.185  -2.437   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       3.391  -1.143   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -2.667   1.540   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -5.335   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.335   1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -6.875   1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.795   1.540   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -5.335   3.080   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       1.334   2.310   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       8.002  -0.000   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       9.336  -0.770   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.335  -1.540   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    9   39                                             
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   24   36                                             
CONECT    9    8    5   10                                                  
CONECT   10    9   11   21                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19   20                                             
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   17                                                            
CONECT   21   10   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23    8   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   34                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   26   35   36                                             
CONECT   35   34                                                            
CONECT   36   34    8   37                                                  
CONECT   37   36   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37    5   40                                                  
CONECT   40   39                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   88    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₆O₁₂

Average Mass

564.5840 Da

Monoisotopic Mass

564.22068 Da

IUPAC Name

methyl (1R,2S,3R,6R,8R,13S,14R,15R,16S)-10,15,16-trihydroxy-3-{[(2Z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0^{1,6}.0^{2,17}.0^{8,13}]nonadec-9-ene-17-carboxylate

Traditional Name

CAS Registry Number

Not Available

SMILES

COC(=O)C12OC[C@@]34[C@H]1[C@@H](OC(=O)\C=C(\C)C(C)(C)O)C(=O)O[C@@H]3C[C@H]1C(C)=C(O)C(=O)C[C@]1(C)[C@H]4[C@@H](O)[C@@H]2O

InChI Identifier

InChI=1S/C28H36O12/c1-11(25(3,4)36)7-16(30)40-19-21-27-10-38-28(21,24(35)37-6)22(33)18(32)20(27)26(5)9-14(29)17(31)12(2)13(26)8-15(27)39-23(19)34/h7,13,15,18-22,31-33,36H,8-10H2,1-6H3/b11-7-/t13-,15+,18+,19+,20+,21+,22-,26-,27+,28?/m0/s1

InChI Key

KCVFVYXSNLKEHU-CRDYEVGZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Brucea javanica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Quassinoids

Alternative Parents

Substituents

Triterpenoid
C-20 quassinoid skeleton
Quassinoid
Naphthopyran
Naphthalene
Furopyran
Tricarboxylic acid or derivatives
Beta-hydroxy acid
Delta valerolactone
Cyclohexenone
Fatty acid ester
Delta_valerolactone
Oxepane
Hydroxy acid
Fatty acyl
Oxane
Pyran
Tetrahydrofuran
Tertiary alcohol
Methyl ester
Cyclic alcohol
Furan
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Cyclic ketone
Lactone
Secondary alcohol
Ketone
Carboxylic acid ester
Organoheterocyclic compound
Polyol
Dialkyl ether
Enol
Ether
Carboxylic acid derivative
Oxacycle
Organic oxide
Carbonyl group
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.35	ChemAxon
pKa (Strongest Acidic)	8.64	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	186.12 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	135.75 m³·mol⁻¹	ChemAxon
Polarizability	56.41 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4531467

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5384083

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate (NP0272656)

MOL for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

3D MOL for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

3D SDF for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

3D-SDF for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

PDB for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

3D PDB for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

SMILES for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

INCHI for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

Structure for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)

3D Structure for NP0272656 (methyl (1r,2s,3r,6r,8r,13s,14r,15r,16s)-10,15,16-trihydroxy-3-{[(2z)-4-hydroxy-3,4-dimethylpent-2-enoyl]oxy}-9,13-dimethyl-4,11-dioxo-5,18-dioxapentacyclo[12.5.0.0¹,⁶.0²,¹⁷.0⁸,¹³]nonadec-9-ene-17-carboxylate)