NP-MRD: Showing NP-Card for (5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate (NP0272651)

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Record Information

Version

2.0

Created at

2022-09-08 19:21:03 UTC

Updated at

2022-09-08 19:21:03 UTC

NP-MRD ID

NP0272651

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate

Description

(5E,8E,10E,12E,14E,16E,18Z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle. Based on a literature review very few articles have been published on (5E,8E,10E,12E,14E,16E,18Z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082221212D          

 31 30  0  0  0  0            999 V2000
    6.0474   10.0914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   10.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184   10.0914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    9.2664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    8.8539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    8.8539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    8.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    7.6164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    6.7914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    6.3789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    6.3789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    5.5539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  2  0  0  0  0
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 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
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 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  2  0  0  0  0
M  END

     RDKit          3D

 73 72  0  0  0  0  0  0  0  0999 V2000
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   -5.2219    0.4185    0.8660 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7995    1.6136    0.1723 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9974    0.1649    2.1313 C   0  0  2  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309082221212D          

 31 30  0  0  0  0            999 V2000
    6.0474   10.0914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   10.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6184    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0272651

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C/C(/C)=C/C=C/C(/C)=C/C=C/C(/C)=C/C(C)\C=C(/C)C(O)C(C)C(C)OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C28H42O3/c1-10-13-20(2)14-11-15-21(3)16-12-17-22(4)18-23(5)19-24(6)28(30)25(7)26(8)31-27(9)29/h10-19,23,25-26,28,30H,1-9H3/b13-10-,15-11+,17-12+,20-14+,21-16+,22-18+,24-19+

> <INCHI_KEY>
NJOUGKMJLWWKLH-XLWWUSDISA-N

> <FORMULA>
C28H42O3

> <MOLECULAR_WEIGHT>
426.641

> <EXACT_MASS>
426.313395212

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
52.75672357631993

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5E,8E,10E,12E,14E,16E,18Z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate

> <JCHEM_LOGP>
6.234283428666668

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.291834295005312

> <JCHEM_PKA_STRONGEST_BASIC>
-3.108551679364676

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
140.10130000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(5E,8E,10E,12E,14E,16E,18Z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      11.288  18.837   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.955  19.607   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.621  18.837   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.621  17.297   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.955  16.527   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.287  16.527   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.287  14.987   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.954  14.217   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.954  12.677   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.287  11.907   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.620  11.907   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.620  10.367   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.286   9.597   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.286   8.057   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.620   7.287   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.953   7.287   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.953   5.747   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.619   4.977   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.286   4.977   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.953   2.667   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       4.620   1.127   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.954   4.977   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.287   1.127   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       8.621   3.437   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      11.288   3.437   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       9.955   1.127   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   60    0
END

View in JSmol

Synonyms

Value	Source
(5E,8E,10E,12E,14E,16E,18Z)-4-Hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetic acid	Generator

Chemical Formula

C₂₈H₄₂O₃

Average Mass

426.6410 Da

Monoisotopic Mass

426.31340 Da

IUPAC Name

(5E,8E,10E,12E,14E,16E,18Z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate

Traditional Name

(5E,8E,10E,12E,14E,16E,18Z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate

CAS Registry Number

Not Available

SMILES

C\C=C/C(/C)=C/C=C/C(/C)=C/C=C/C(/C)=C/C(C)\C=C(/C)C(O)C(C)C(C)OC(C)=O

InChI Identifier

InChI=1S/C28H42O3/c1-10-13-20(2)14-11-15-21(3)16-12-17-22(4)18-23(5)19-24(6)28(30)25(7)26(8)31-27(9)29/h10-19,23,25-26,28,30H,1-9H3/b13-10-,15-11+,17-12+,20-14+,21-16+,22-18+,24-19+

InChI Key

NJOUGKMJLWWKLH-XLWWUSDISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Acyclic diterpenoids

Alternative Parents

Substituents

Acyclic diterpenoid
Long chain fatty alcohol
Fatty alcohol ester
Fatty alcohol
Fatty acyl
Carboxylic acid ester
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.23	ChemAxon
pKa (Strongest Acidic)	14.29	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	140.1 m³·mol⁻¹	ChemAxon
Polarizability	52.76 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9352901

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11177809

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate (NP0272651)

MOL for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

3D MOL for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

3D SDF for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

3D-SDF for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

PDB for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

3D PDB for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

SMILES for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

INCHI for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

Structure for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)

3D Structure for NP0272651 ((5e,8e,10e,12e,14e,16e,18z)-4-hydroxy-3,5,7,9,13,17-hexamethylicosa-5,8,10,12,14,16,18-heptaen-2-yl acetate)