NP-MRD: Showing NP-Card for methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate (NP0271386)

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Record Information

Version

2.0

Created at

2022-09-08 17:39:40 UTC

Updated at

2022-09-08 17:39:40 UTC

NP-MRD ID

NP0271386

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate

Description

Methyl (1S,4R,6S,9S,10R,11S)-10-[(2S,3R)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]Tetradeca-2,7-diene-8-carboxylate belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety. methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate is found in Melampodium leucanthum. Based on a literature review very few articles have been published on methyl (1S,4R,6S,9S,10R,11S)-10-[(2S,3R)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]Tetradeca-2,7-diene-8-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082219392D          

 30 33  0  0  1  0            999 V2000
    1.4922   -1.5109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1905   -1.0716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2456   -0.2485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6120    0.2799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0455   -0.0465    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4847   -0.7448    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2976   -0.8856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8260   -0.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5416    0.5224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6389   -0.3929    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4518   -0.5337    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9234   -1.1673    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3950   -1.8008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5821   -1.6600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8666   -2.4344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3382   -3.0680    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6795   -2.5752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9640   -3.3496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0537   -2.2936    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8287   -3.0873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2408   -2.1528    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7124   -2.7863    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9969   -3.5607    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8098   -3.7016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4685   -4.1943    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7528   -3.7840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0007   -4.8247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1887   -4.9704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5583   -5.5026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9563   -1.3784    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  4  0  0  0
  8 10  1  0  0  0  0
 10 11  1  1  0  0  0
 12 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  4  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 25 23  1  1  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  6  0  0  0
 21 30  1  0  0  0  0
 30  2  1  1  0  0  0
  6 30  1  0  0  0  0
M  END

     RDKit          3D

 54 57  0  0  0  0  0  0  0  0999 V2000
    1.0124   -0.2358   -3.4094 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4804   -1.1254   -2.5884 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9058   -2.4915   -2.4457 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7941   -3.0834   -3.1035 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1637   -3.0699   -1.4425 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9819   -2.2760   -1.2166 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4037   -2.4129    0.1863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6056   -2.1042    0.6448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9752   -2.2636    2.0724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6000   -1.5883   -0.2940 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8247   -1.1176    0.1228 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8188   -0.1775   -0.2900 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2526    0.6197    0.7916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0653    1.2214    0.7707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6168    1.9909    1.9242 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5007    2.5524    1.8952 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3812    2.1328    3.0721 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8483    2.9014    4.1305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1164    1.1935   -0.3361 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8786    1.3473   -1.5305 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2712   -0.0001   -0.4940 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0411    0.4554   -0.7589 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1259    0.1679    0.0443 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9042   -0.5353    1.0527 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5086    0.6452   -0.2299 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7572    1.4867   -1.4412 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0164    1.3311    0.9957 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6290    0.1743    0.5450 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0115    0.3472   -0.0294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6617   -0.8889   -1.6521 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6373    0.7856   -3.4647 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8393   -0.4974   -4.0526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7631   -2.6695   -1.9313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6921   -2.7945    0.9227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4431   -3.2844    2.1796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7738   -1.5503    2.3792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0979   -2.2346    2.7501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6410   -2.1371   -1.2632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1432    0.2962   -1.2538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8148    0.7569    1.7033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8471    2.4935    4.4145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5660    2.8599    4.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6630    3.9591    3.8320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4766    2.0986   -0.3325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4406    2.1510   -1.3513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3254   -0.6115    0.4289 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6477    1.1039   -1.9883 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9058    1.5519   -2.1352 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0132    2.5564   -1.1863 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5049   -0.7193    1.2146 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0507   -0.2002   -0.9961 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7450   -0.1009    0.6850 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2563    1.4117   -0.2337 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4603   -0.4217   -2.2756 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
 17 15  1  0
 15 16  2  0
 15 14  1  0
 14 13  2  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  8  1  0
  8  9  1  0
  8  7  2  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  2 30  1  0
 30 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 25 23  1  1
 25 26  1  0
 25 27  1  0
 27 28  1  0
 28 29  1  0
 21 19  1  0
 19 20  1  0
 19 14  1  0
 10 12  1  0
 30  6  1  0
 28 25  1  0
 18 41  1  0
 18 42  1  0
 18 43  1  0
 13 40  1  0
 12 39  1  6
 10 38  1  6
  9 35  1  0
  9 36  1  0
  9 37  1  0
  7 34  1  0
  6 33  1  6
  1 31  1  0
  1 32  1  0
 30 54  1  6
 21 46  1  1
 26 47  1  0
 26 48  1  0
 26 49  1  0
 28 50  1  1
 29 51  1  0
 29 52  1  0
 29 53  1  0
 19 44  1  1
 20 45  1  0
M  END


  Mrv1652309082219392D          

 30 33  0  0  1  0            999 V2000
    1.4922   -1.5109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1905   -1.0716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2456   -0.2485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6120    0.2799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0455   -0.0465    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4847   -0.7448    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2976   -0.8856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8260   -0.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5416    0.5224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6389   -0.3929    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4518   -0.5337    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9234   -1.1673    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3950   -1.8008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5821   -1.6600    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8666   -2.4344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3382   -3.0680    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6795   -2.5752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9640   -3.3496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0537   -2.2936    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8287   -3.0873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2408   -2.1528    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7124   -2.7863    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9969   -3.5607    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8098   -3.7016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4685   -4.1943    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7528   -3.7840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0007   -4.8247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1887   -4.9704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5583   -5.5026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9563   -1.3784    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  4  0  0  0
  8 10  1  0  0  0  0
 10 11  1  1  0  0  0
 12 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  4  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 25 23  1  1  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  6  0  0  0
 21 30  1  0  0  0  0
 30  2  1  1  0  0  0
  6 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0271386

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=C[C@@H]2O[C@@H]2C(C)=C[C@@H]2OC(=O)C(=C)[C@@H]2[C@@H](OC(=O)[C@@]2(C)O[C@@H]2C)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C21H24O9/c1-8-6-12-14(9(2)18(23)28-12)17(29-20(25)21(4)10(3)30-21)15(22)11(19(24)26-5)7-13-16(8)27-13/h6-7,10,12-17,22H,2H2,1,3-5H3/t10-,12+,13+,14+,15+,16-,17-,21+/m1/s1

> <INCHI_KEY>
ZFFQDPLDTMMAKO-OPYZLHHXSA-N

> <FORMULA>
C21H24O9

> <MOLECULAR_WEIGHT>
420.414

> <EXACT_MASS>
420.142032353

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
40.15965447647564

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1S,4R,6S,9S,10R,11S)-10-[(2S,3R)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0^{4,6}]tetradeca-2,7-diene-8-carboxylate

> <JCHEM_LOGP>
1.2916011693333331

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.26429690990446

> <JCHEM_PKA_STRONGEST_BASIC>
-3.5579965316077873

> <JCHEM_POLAR_SURFACE_AREA>
124.19

> <JCHEM_REFRACTIVITY>
100.9371

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1S,4R,6S,9S,10R,11S)-10-[(2S,3R)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0^{4,6}]tetradeca-2,7-diene-8-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       2.785  -2.820   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.089  -2.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.192  -0.464   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.009   0.523   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       5.685  -0.087   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       6.505  -1.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.022  -1.653   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.009  -0.470   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.478   0.975   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.526  -0.733   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      12.043  -0.996   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      11.057  -2.179   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.071  -3.362   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.553  -3.099   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.084  -4.544   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.098  -5.727   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      10.602  -4.807   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      11.133  -6.253   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.567  -4.281   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       7.147  -5.763   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       6.050  -4.019   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       5.063  -5.201   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       5.594  -6.647   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.112  -6.910   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       4.608  -7.829   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.272  -7.063   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       5.601  -9.006   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       4.086  -9.278   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.909 -10.272   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.519  -2.573   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   30                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   30                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10   12                                                       
CONECT   12   11   10   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17                                                            
CONECT   19   14   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   30                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27   28                                             
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   25   29                                                  
CONECT   29   28                                                            
CONECT   30   21    2    6                                                  
MASTER        0    0    0    0    0    0    0    0   30    0   66    0
END

View in JSmol

Synonyms

Value	Source
Methyl (1S,4R,6S,9S,10R,11S)-10-[(2S,3R)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0,]tetradeca-2,7-diene-8-carboxylic acid	Generator

Chemical Formula

C₂₁H₂₄O₉

Average Mass

420.4140 Da

Monoisotopic Mass

420.14203 Da

IUPAC Name

methyl (1S,4R,6S,9S,10R,11S)-10-[(2S,3R)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0^{4,6}]tetradeca-2,7-diene-8-carboxylate

Traditional Name

methyl (1S,4R,6S,9S,10R,11S)-10-[(2S,3R)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0^{4,6}]tetradeca-2,7-diene-8-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C[C@@H]2O[C@@H]2C(C)=C[C@@H]2OC(=O)C(=C)[C@@H]2[C@@H](OC(=O)[C@@]2(C)O[C@@H]2C)[C@H]1O

InChI Identifier

InChI=1S/C21H24O9/c1-8-6-12-14(9(2)18(23)28-12)17(29-20(25)21(4)10(3)30-21)15(22)11(19(24)26-5)7-13-16(8)27-13/h6-7,10,12-17,22H,2H2,1,3-5H3/t10-,12+,13+,14+,15+,16-,17-,21+/m1/s1

InChI Key

ZFFQDPLDTMMAKO-OPYZLHHXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Melampodium leucanthum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Germacranolides and derivatives

Alternative Parents

Substituents

Germacranolide
Sesquiterpenoid
Tricarboxylic acid or derivatives
Beta-hydroxy acid
Oxirane carboxylic acid or derivatives
Oxirane carboxylic acid
Hydroxy acid
Gamma butyrolactone
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Tetrahydrofuran
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.29	ChemAxon
pKa (Strongest Acidic)	13.26	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	124.19 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	100.94 m³·mol⁻¹	ChemAxon
Polarizability	40.16 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163015801

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate (NP0271386)

MOL for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

3D MOL for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

3D SDF for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

3D-SDF for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

PDB for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

3D PDB for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

SMILES for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

INCHI for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

Structure for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)

3D Structure for NP0271386 (methyl (1s,4r,6s,9s,10r,11s)-10-[(2s,3r)-2,3-dimethyloxirane-2-carbonyloxy]-9-hydroxy-3-methyl-12-methylidene-13-oxo-5,14-dioxatricyclo[9.3.0.0⁴,⁶]tetradeca-2,7-diene-8-carboxylate)