NP-MRD: Showing NP-Card for (4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate (NP0269896)

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Record Information

Version

2.0

Created at

2022-09-08 15:31:25 UTC

Updated at

2022-09-08 15:31:25 UTC

NP-MRD ID

NP0269896

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate

Description

Striatoid E belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. (4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate is found in Cyathus striatus. Based on a literature review very few articles have been published on Striatoid E.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082217312D          

 35 40  0  0  1  0            999 V2000
    0.4714    5.1492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309082217312D          

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 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 10 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  9 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
 24 25  1  1  0  0  0
 26 25  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 26 33  1  0  0  0  0
 33 34  1  1  0  0  0
 33 35  1  0  0  0  0
 35  6  1  6  0  0  0
 24 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0269896

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1=C2[C@H]3CC=C4[C@@H]5[C@H](O[C@@H]6OC[C@@](O)([C@H](O)[C@]56O)[C@@H]4OC(C)=O)[C@]3(C)CC[C@@]2(C)[C@@H](O)C1

> <INCHI_IDENTIFIER>
InChI=1S/C27H38O8/c1-12(2)15-10-17(29)25(5)9-8-24(4)16(18(15)25)7-6-14-19-21(24)35-23-27(19,32)22(30)26(31,11-33-23)20(14)34-13(3)28/h6,12,16-17,19-23,29-32H,7-11H2,1-5H3/t16-,17+,19-,20-,21+,22+,23+,24-,25+,26+,27-/m1/s1

> <INCHI_KEY>
NWQFLEJNKAILDU-UEXWUNLFSA-N

> <FORMULA>
C27H38O8

> <MOLECULAR_WEIGHT>
490.593

> <EXACT_MASS>
490.256668184

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
52.18743591656417

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4R,8S,9R,12R,13S,15S,18R,19S,20R,21R,22R)-8,18,19,20-tetrahydroxy-9,12-dimethyl-6-(propan-2-yl)-14,16-dioxahexacyclo[16.3.1.0^{4,12}.0^{5,9}.0^{13,21}.0^{15,20}]docosa-1,5-dien-22-yl acetate

> <JCHEM_LOGP>
0.49965361199999797

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.277175521296888

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.507426784632912

> <JCHEM_PKA_STRONGEST_BASIC>
-0.8481363486801364

> <JCHEM_POLAR_SURFACE_AREA>
125.68000000000002

> <JCHEM_REFRACTIVITY>
125.15899999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(4R,8S,9R,12R,13S,15S,18R,19S,20R,21R,22R)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0^{4,12}.0^{5,9}.0^{13,21}.0^{15,20}]docosa-1,5-dien-22-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       0.880   9.612   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.967   8.074   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -0.321   7.230   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       2.342   7.381   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.429   5.844   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.024   5.169   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.497   5.778   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.959   5.192   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.391   3.697   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.922   3.527   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.073   4.550   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.921   6.082   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.518   6.718   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.173   6.980   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.401   3.772   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.072   2.267   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      12.095   1.116   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       9.539   2.116   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.301   0.777   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.626   0.876   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.096   1.046   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.478   2.457   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.700   1.128   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.878   2.299   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       3.743   1.123   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.192   1.715   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       0.573   1.988   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -0.051   3.556   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.915   4.990   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -0.130   6.121   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       1.656   4.168   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       0.517   3.133   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       2.670   3.061   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       3.784   1.998   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       3.989   3.601   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7   35                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   22                                                  
CONECT   10    9   11   18                                                  
CONECT   11   10   12   15                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   11   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   10   19   20                                             
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21    9   23   24                                             
CONECT   23   22                                                            
CONECT   24   22   25   35                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   33                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28    5   30   31                                             
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   26   34   35                                             
CONECT   34   33                                                            
CONECT   35   33    6   24                                                  
MASTER        0    0    0    0    0    0    0    0   35    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₈O₈

Average Mass

490.5930 Da

Monoisotopic Mass

490.25667 Da

IUPAC Name

(4R,8S,9R,12R,13S,15S,18R,19S,20R,21R,22R)-8,18,19,20-tetrahydroxy-9,12-dimethyl-6-(propan-2-yl)-14,16-dioxahexacyclo[16.3.1.0^{4,12}.0^{5,9}.0^{13,21}.0^{15,20}]docosa-1,5-dien-22-yl acetate

Traditional Name

(4R,8S,9R,12R,13S,15S,18R,19S,20R,21R,22R)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0^{4,12}.0^{5,9}.0^{13,21}.0^{15,20}]docosa-1,5-dien-22-yl acetate

CAS Registry Number

Not Available

SMILES

CC(C)C1=C2[C@H]3CC=C4[C@@H]5[C@H](O[C@@H]6OC[C@@](O)([C@H](O)[C@]56O)[C@@H]4OC(C)=O)[C@]3(C)CC[C@@]2(C)[C@@H](O)C1

InChI Identifier

InChI=1S/C27H38O8/c1-12(2)15-10-17(29)25(5)9-8-24(4)16(18(15)25)7-6-14-19-21(24)35-23-27(19,32)22(30)26(31,11-33-23)20(14)34-13(3)28/h6,12,16-17,19-23,29-32H,7-11H2,1-5H3/t16-,17+,19-,20-,21+,22+,23+,24-,25+,26+,27-/m1/s1

InChI Key

NWQFLEJNKAILDU-UEXWUNLFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cyathus striatus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Furopyran
Monosaccharide
Oxane
Pyran
Cyclic alcohol
Furan
Tertiary alcohol
Tetrahydrofuran
Carboxylic acid ester
Secondary alcohol
Polyol
Oxacycle
Monocarboxylic acid or derivatives
Acetal
Carboxylic acid derivative
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Alcohol
Organic oxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.5	ChemAxon
pKa (Strongest Acidic)	11.51	ChemAxon
pKa (Strongest Basic)	-0.85	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	125.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	125.16 m³·mol⁻¹	ChemAxon
Polarizability	52.19 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

59004878

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

122177654

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate (NP0269896)

MOL for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

3D MOL for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

3D SDF for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

3D-SDF for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

PDB for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

3D PDB for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

SMILES for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

INCHI for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

Structure for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)

3D Structure for NP0269896 ((4r,8s,9r,12r,13s,15s,18r,19s,20r,21r,22r)-8,18,19,20-tetrahydroxy-6-isopropyl-9,12-dimethyl-14,16-dioxahexacyclo[16.3.1.0⁴,¹².0⁵,⁹.0¹³,²¹.0¹⁵,²⁰]docosa-1,5-dien-22-yl acetate)