NP-MRD: Showing NP-Card for 2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid (NP0269847)

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Record Information

Version

2.0

Created at

2022-09-08 15:27:31 UTC

Updated at

2022-09-08 15:27:32 UTC

NP-MRD ID

NP0269847

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid

Description

2-[(2-{[2-(2-Amino-N,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid belongs to the class of organic compounds known as peptides. Peptides are compounds containing an amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another. 2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid is found in Simplicillium obclavatum. Based on a literature review very few articles have been published on 2-[(2-{[2-(2-amino-N,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082217272D          

 37 38  0  0  0  0            999 V2000
   -0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -6.6000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -7.4250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.8579   -9.0750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2868   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5724  -11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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  3  4  1  0  0  0  0
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 21 22  1  4  0  0  0
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 22 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35 37  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309082217272D          

 37 38  0  0  0  0            999 V2000
   -0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
 11 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 21 22  1  4  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 25 26  1  4  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 26 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 22 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0269847

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)C(N)C(=O)N(C)C(CC1=CC=CC=C1)C(O)=NC(C(C)C)C(O)=NC1=CC=CC=C1C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C28H38N4O5/c1-6-18(4)23(29)27(35)32(5)22(16-19-12-8-7-9-13-19)25(33)31-24(17(2)3)26(34)30-21-15-11-10-14-20(21)28(36)37/h7-15,17-18,22-24H,6,16,29H2,1-5H3,(H,30,34)(H,31,33)(H,36,37)

> <INCHI_KEY>
XTDZXTPSBXVWFR-UHFFFAOYSA-N

> <FORMULA>
C28H38N4O5

> <MOLECULAR_WEIGHT>
510.635

> <EXACT_MASS>
510.28422034

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
55.052151511160446

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(2-{[2-(2-amino-N,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid

> <JCHEM_LOGP>
2.475525546780565

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
4.035236832914788

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.286293503920212

> <JCHEM_PKA_STRONGEST_BASIC>
8.49988401935786

> <JCHEM_POLAR_SURFACE_AREA>
148.81

> <JCHEM_REFRACTIVITY>
144.01030000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
2-[(2-{[2-(2-amino-N,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.334 -14.630   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000 -13.860   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334 -14.630   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334 -16.170   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667 -13.860   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       2.667 -12.320   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       4.001 -14.630   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.001 -16.170   0.000  0.00  0.00           O+0
HETATM    9  N   UNK     0       5.335 -13.860   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       5.335 -12.320   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.668 -14.630   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.002 -13.860   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.336 -14.630   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.669 -13.860   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.003 -14.630   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.003 -16.170   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.669 -16.940   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.336 -16.170   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.668 -16.170   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       5.335 -16.940   0.000  0.00  0.00           O+0
HETATM   21  N   UNK     0       8.002 -16.940   0.000  0.00  0.00           N+0
HETATM   22  C   UNK     0       8.002 -18.480   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.336 -19.250   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      10.669 -18.480   0.000  0.00  0.00           O+0
HETATM   25  N   UNK     0       9.336 -20.790   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0      10.669 -21.560   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      12.003 -20.790   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      13.337 -21.560   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.337 -23.100   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      12.003 -23.870   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.669 -23.100   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.336 -23.870   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       8.002 -23.100   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0       9.336 -25.410   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       6.668 -19.250   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       5.335 -18.480   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       6.668 -20.790   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   19                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13                                                       
CONECT   19   11   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23   35                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   26   32                                                  
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   22   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   76    0
END

View in JSmol

Synonyms

Value	Source
2-[(2-{[2-(2-amino-N,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoate	Generator

Chemical Formula

C₂₈H₃₈N₄O₅

Average Mass

510.6350 Da

Monoisotopic Mass

510.28422 Da

IUPAC Name

2-[(2-{[2-(2-amino-N,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid

Traditional Name

2-[(2-{[2-(2-amino-N,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid

CAS Registry Number

Not Available

SMILES

CCC(C)C(N)C(=O)N(C)C(CC1=CC=CC=C1)C(O)=NC(C(C)C)C(O)=NC1=CC=CC=C1C(O)=O

InChI Identifier

InChI=1S/C28H38N4O5/c1-6-18(4)23(29)27(35)32(5)22(16-19-12-8-7-9-13-19)25(33)31-24(17(2)3)26(34)30-21-15-11-10-14-20(21)28(36)37/h7-15,17-18,22-24H,6,16,29H2,1-5H3,(H,30,34)(H,31,33)(H,36,37)

InChI Key

XTDZXTPSBXVWFR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Simplicillium obclavatum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as peptides. Peptides are compounds containing an amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Peptides

Alternative Parents

Substituents

Alpha peptide
Isoleucine or derivatives
Alpha-amino acid amide
Alpha-amino acid or derivatives
Amphetamine or derivatives
Benzoic acid or derivatives
Benzoic acid
Benzoyl
Monocyclic benzene moiety
Benzenoid
N-acyl-amine
Tertiary carboxylic acid amide
Amino acid or derivatives
Amino acid
Carboxamide group
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Amine
Carbonyl group
Primary amine
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Organopnictogen compound
Organooxygen compound
Organic oxide
Primary aliphatic amine
Organonitrogen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.48	ChemAxon
pKa (Strongest Acidic)	3.29	ChemAxon
pKa (Strongest Basic)	8.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	148.81 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	144.01 m³·mol⁻¹	ChemAxon
Polarizability	55.05 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163067486

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid (NP0269847)

MOL for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

3D MOL for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

3D SDF for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

3D-SDF for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

PDB for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

3D PDB for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

SMILES for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

INCHI for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

Structure for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)

3D Structure for NP0269847 (2-[(2-{[2-(2-amino-n,3-dimethylpentanamido)-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-3-methylbutylidene)amino]benzoic acid)