NP-MRD: Showing NP-Card for samaderine c (NP0269558)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-08 15:05:44 UTC

Updated at

2022-09-08 15:05:44 UTC

NP-MRD ID

NP0269558

Secondary Accession Numbers

None

Natural Product Identification

Common Name

samaderine c

Description

Samaderine C belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring. samaderine c is found in Samadera indica. samaderine c was first documented in 2013 (PMID: 23302065). Based on a literature review very few articles have been published on samaderine C.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082217052D          

 26 30  0  0  1  0            999 V2000
    4.3297   -0.3622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8694    0.3225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2323    1.0634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7720    1.7481    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1348    2.4890    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9489    1.6919    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4887    2.3765    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5861    0.9509    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1259    1.6357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0463    0.2662    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6798   -0.4792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8510   -0.5102    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5200   -1.2659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2774    0.1602    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8627   -0.5833    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0365   -0.4352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0537    0.4373    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8644    0.5905    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4345    1.3828    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2718    1.7261    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5081    0.9244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3243    0.8043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4359    0.5653    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2597    1.5848    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5577    2.3541    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7250    0.8923    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10  2  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 23 21  1  6  0  0  0
 17 23  1  0  0  0  0
 14 23  1  0  0  0  0
 19 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
  8 26  1  0  0  0  0
 26 14  1  6  0  0  0
M  END

     RDKit          3D

 50 54  0  0  0  0  0  0  0  0999 V2000
    3.6322   -1.2852    1.9928 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9266   -0.3910    1.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6661    0.4381    0.3197 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0949    1.3870   -0.6699 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6507    2.6649   -0.5609 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5915    1.4828   -0.6048 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1848    1.8721   -1.9037 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9263    0.1743   -0.3292 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2683   -0.7684   -1.4509 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4779   -0.4718    0.9521 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9271   -1.8461    1.1028 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4867   -1.9710    0.6875 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0393   -3.0459    0.9637 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2772   -0.9637   -0.0052 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8554   -1.3942   -1.3166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9827   -0.6341   -1.5629 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3062    0.0636   -0.4264 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7592    0.0758   -0.1020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6647    1.4232   -0.3564 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4845    1.6185    1.0466 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4614    0.4118    1.7099 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3473    0.2225    2.9626 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5916   -0.6518    0.7309 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2468    1.3044   -0.9395 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2705    0.9919   -2.2721 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5254    0.3394   -0.0658 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6622   -1.5060    1.6844 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0264   -2.2032    2.1659 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6212   -0.7466    2.9850 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7218    0.4362    0.4437 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4081    1.0121   -1.6832 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4612    2.7445   -1.1424 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2669    2.2906    0.0834 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8170    2.4877   -2.3122 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9753   -1.8030   -1.2877 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3985   -0.7764   -1.5016 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9650   -0.3552   -2.4470 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0418    0.1557    1.7805 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9873   -2.1365    2.1721 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5081   -2.6175    0.5384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1546   -2.4714   -1.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2027   -1.3410   -2.1752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0946   -0.9695    0.0802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8893    0.6678    0.8382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3413    0.4952   -0.9277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2374    2.2189   -0.8296 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1106   -1.5501    1.0482 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8218    2.3427   -0.8100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4515    1.8111   -2.7952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6047    0.7669    0.9825 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  6
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 14 12  1  1
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  1
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 19 24  1  0
 24 25  1  0
 24 26  1  0
 10  2  1  0
 23 14  1  0
 26  8  1  0
 26 14  1  0
 23 17  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  3 30  1  0
  4 31  1  6
  5 32  1  0
  6 33  1  1
  7 34  1  0
  9 35  1  0
  9 36  1  0
  9 37  1  0
 10 38  1  1
 11 39  1  0
 11 40  1  0
 15 41  1  0
 15 42  1  0
 18 43  1  0
 18 44  1  0
 18 45  1  0
 19 46  1  6
 23 47  1  1
 24 48  1  6
 25 49  1  0
 26 50  1  1
M  END


  Mrv1652309082217052D          

 26 30  0  0  1  0            999 V2000
    4.3297   -0.3622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8694    0.3225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2323    1.0634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7720    1.7481    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1348    2.4890    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9489    1.6919    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4887    2.3765    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5861    0.9509    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1259    1.6357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0463    0.2662    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6798   -0.4792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8510   -0.5102    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5200   -1.2659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2774    0.1602    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8627   -0.5833    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0365   -0.4352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0537    0.4373    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8644    0.5905    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4345    1.3828    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2718    1.7261    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5081    0.9244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3243    0.8043    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4359    0.5653    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2597    1.5848    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5577    2.3541    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7250    0.8923    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10  2  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 23 21  1  6  0  0  0
 17 23  1  0  0  0  0
 14 23  1  0  0  0  0
 19 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
  8 26  1  0  0  0  0
 26 14  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0269558

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C[C@H](O)[C@@H](O)[C@@]2(C)[C@H]1CC(=O)[C@@]13CO[C@]4(C)[C@@H](OC(=O)[C@H]14)[C@H](O)[C@H]23

> <INCHI_IDENTIFIER>
InChI=1S/C19H24O7/c1-7-4-9(20)14(23)17(2)8(7)5-10(21)19-6-25-18(3)13(19)16(24)26-15(18)11(22)12(17)19/h4,8-9,11-15,20,22-23H,5-6H2,1-3H3/t8-,9-,11+,12+,13-,14+,15-,17-,18-,19+/m0/s1

> <INCHI_KEY>
PDGZDUYWUXJXRO-ANPVQLFHSA-N

> <FORMULA>
C19H24O7

> <MOLECULAR_WEIGHT>
364.394

> <EXACT_MASS>
364.152203113

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
35.97807275966915

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,4S,5R,8S,9R,10R,11S,12S,13S,16S)-9,12,13-trihydroxy-4,11,15-trimethyl-3,7-dioxapentacyclo[8.8.0.0^{1,5}.0^{4,8}.0^{11,16}]octadec-14-ene-6,18-dione

> <JCHEM_LOGP>
-0.9231853193333335

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.910146297431414

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.272714355855655

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3185266562332822

> <JCHEM_POLAR_SURFACE_AREA>
113.29

> <JCHEM_REFRACTIVITY>
88.17699999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4S,5R,8S,9R,10R,11S,12S,13S,16S)-9,12,13-trihydroxy-4,11,15-trimethyl-3,7-dioxapentacyclo[8.8.0.0^{1,5}.0^{4,8}.0^{11,16}]octadec-14-ene-6,18-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       8.082  -0.676   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.223   0.602   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.900   1.985   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.041   3.263   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       7.718   4.646   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       5.505   3.158   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.646   4.436   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.827   1.775   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.968   3.053   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.686   0.497   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.002  -0.895   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.455  -0.952   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.837  -2.363   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.385   0.299   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.610  -1.089   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       0.068  -0.812   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -0.100   0.816   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.614   1.102   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.811   2.581   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.507   3.222   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -0.948   1.726   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -2.472   1.501   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.814   1.055   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.351   2.958   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.908   4.394   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.220   1.666   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10   26                                             
CONECT    9    8                                                            
CONECT   10    8    2   11                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   23   26                                             
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   23                                             
CONECT   18   17                                                            
CONECT   19   17   20   24                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   17   14                                                  
CONECT   24   19   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24    8   14                                                  
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

View in JSmol

Synonyms

Value	Source
Samaderin C	MeSH

Chemical Formula

C₁₉H₂₄O₇

Average Mass

364.3940 Da

Monoisotopic Mass

364.15220 Da

IUPAC Name

(1R,4S,5R,8S,9R,10R,11S,12S,13S,16S)-9,12,13-trihydroxy-4,11,15-trimethyl-3,7-dioxapentacyclo[8.8.0.0^{1,5}.0^{4,8}.0^{11,16}]octadec-14-ene-6,18-dione

Traditional Name

(1R,4S,5R,8S,9R,10R,11S,12S,13S,16S)-9,12,13-trihydroxy-4,11,15-trimethyl-3,7-dioxapentacyclo[8.8.0.0^{1,5}.0^{4,8}.0^{11,16}]octadec-14-ene-6,18-dione

CAS Registry Number

Not Available

SMILES

CC1=C[C@H](O)[C@@H](O)[C@@]2(C)[C@H]1CC(=O)[C@@]13CO[C@]4(C)[C@@H](OC(=O)[C@H]14)[C@H](O)[C@H]23

InChI Identifier

InChI=1S/C19H24O7/c1-7-4-9(20)14(23)17(2)8(7)5-10(21)19-6-25-18(3)13(19)16(24)26-15(18)11(22)12(17)19/h4,8-9,11-15,20,22-23H,5-6H2,1-3H3/t8-,9-,11+,12+,13-,14+,15-,17-,18-,19+/m0/s1

InChI Key

PDGZDUYWUXJXRO-ANPVQLFHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Quassia indica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Quassinoids

Alternative Parents

Substituents

C-19 quassinoid skeleton
Caprolactone
Furofuran
Oxepane
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Carboxylic acid ester
Ketone
Lactone
Secondary alcohol
Monocarboxylic acid or derivatives
Oxacycle
Ether
Dialkyl ether
Carboxylic acid derivative
Organoheterocyclic compound
Polyol
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Alcohol
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

cyclic ketone (CHEBI:66160 )
secondary alcohol (CHEBI:66160 )
organic heteropentacyclic compound (CHEBI:66160 )
bridged compound (CHEBI:66160 )
triol (CHEBI:66160 )
cyclic ether (CHEBI:66160 )
lactone (CHEBI:66160 )
quassinoid (CHEBI:66160 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.92	ChemAxon
pKa (Strongest Acidic)	13.27	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	88.18 m³·mol⁻¹	ChemAxon
Polarizability	35.98 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

21181540

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

70697767

PDB ID

Not Available

ChEBI ID

66160

Good Scents ID

Not Available

References

General References

Burns DJ, Mommer S, O'Brien P, Taylor RJ, Whitwood AC, Hachisu S: Stereocontrolled synthesis of the AB rings of samaderine C. Org Lett. 2013 Jan 18;15(2):394-7. doi: 10.1021/ol303385a. Epub 2013 Jan 9. [PubMed:23302065 ]
LOTUS database [Link]

Showing NP-Card for samaderine c (NP0269558)

MOL for NP0269558 (samaderine c)

3D MOL for NP0269558 (samaderine c)

3D SDF for NP0269558 (samaderine c)

3D-SDF for NP0269558 (samaderine c)

PDB for NP0269558 (samaderine c)

3D PDB for NP0269558 (samaderine c)

SMILES for NP0269558 (samaderine c)

INCHI for NP0269558 (samaderine c)

Structure for NP0269558 (samaderine c)

3D Structure for NP0269558 (samaderine c)