NP-MRD: Showing NP-Card for 2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0269223)

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Record Information

Version

2.0

Created at

2022-09-08 14:36:37 UTC

Updated at

2022-09-08 14:36:37 UTC

NP-MRD ID

NP0269223

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Description

2-{[5-Hydroxy-14-(4-hydroxy-6-methylhept-5-en-2-yl)-1-(hydroxymethyl)-6,6,11,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-7-en-9-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol belongs to the class of organic compounds known as cucurbitacins. These are polycyclic compounds containing the tetracyclic cucurbitane nucleus skeleton, 19-(10->9b)-abeo-10alanost-5-ene (also known as 9b-methyl-19-nor lanosta-5-ene), with a variety of oxygenation functionalities at different positions. 2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol is found in Momordica charantia. 2-{[5-Hydroxy-14-(4-hydroxy-6-methylhept-5-en-2-yl)-1-(hydroxymethyl)-6,6,11,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-7-en-9-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004261513442D          

 45 49  0  0  0  0            999 V2000
   -2.6962    0.0341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0071   -0.7301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8244   -0.8429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3307   -0.1916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0198    0.5726    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1480   -0.3044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6543    0.3469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4716    0.2340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3434    1.1111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5008   -1.3814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7301   -2.1739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0473   -2.6369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3959   -2.1305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1983   -2.9315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5838   -2.2757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3035   -3.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8353   -3.6824    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5550   -4.4583    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2571   -4.6035    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5374   -5.3794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3495   -5.5246    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8813   -4.8939    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0056   -6.0101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2859   -6.7860    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8065   -5.8649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3384   -6.4956    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0868   -5.0890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8990   -4.9438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5086   -3.1969    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0404   -2.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7601   -1.7902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2920   -1.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1041   -1.3047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3844   -2.0807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1965   -2.2259    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4643   -3.2649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7358   -3.5281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0520   -1.6450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4798   -1.0143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1995   -0.2384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3323   -0.8691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1444   -0.7239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6762   -1.3546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0361   -0.6122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
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 21 22  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 18 27  1  0  0  0  0
 27 28  1  0  0  0  0
 16 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 30 36  1  0  0  0  0
 36 37  1  0  0  0  0
 36 38  1  0  0  0  0
 31 39  1  0  0  0  0
 15 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 39 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 10 44  1  0  0  0  0
 13 44  1  0  0  0  0
 44 45  1  0  0  0  0
M  END

     RDKit          3D

105109  0  0  0  0  0  0  0  0999 V2000
    6.3336    2.8145    0.0678 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8853    1.5537    0.6437 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9583    1.6541    1.6663 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3924    0.4069    0.2215 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3160    0.3262   -0.7967 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3255    1.2648   -0.6079 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8966   -1.0524   -1.1199 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0696   -1.8536   -0.2025 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7006   -2.0952    1.1575 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6195   -1.8937   -0.2395 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -2.2264    3.1255    2.5047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8809    3.8512    3.5312 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2507    4.7957    0.9632 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0618    6.1430    1.1119 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5065    4.5314   -0.5100 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7293    5.3059   -1.3353 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4208    3.0503   -0.8032 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4713    2.4566   -0.0679 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7257   -0.3642   -1.3673 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0597   -1.5604   -0.9525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4026   -2.3743    0.0665 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0256   -3.6947   -0.5689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2557   -4.3898   -1.0980 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4787   -3.5432   -1.0642 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1488   -3.5560    0.1715 O   0  0  0  0  0  0  0  0  0  0  0  0
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  9  8  1  0
  8  7  1  0
  7  5  1  0
  5  6  1  0
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  8 10  1  0
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 11 12  1  0
 12 13  1  0
 13 14  1  1
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 20 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
 16 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  1  0
 34 36  1  0
 36 37  1  0
 36 38  1  0
 31 39  1  0
 39 40  1  1
 40 41  1  0
 39 42  1  0
 42 43  1  0
 43 44  1  0
 44 45  1  1
 44 10  1  0
 44 13  1  0
 39 15  1  0
 27 18  1  0
 36 30  1  0
  9 58  1  0
  9 59  1  0
  9 60  1  0
  8 57  1  6
  7 55  1  0
  7 56  1  0
  5 53  1  6
  6 54  1  0
  4 52  1  0
  1 46  1  0
  1 47  1  0
  1 48  1  0
  3 49  1  0
  3 50  1  0
  3 51  1  0
 10 61  1  1
 11 62  1  0
 11 63  1  0
 12 64  1  0
 12 65  1  0
 14 66  1  0
 14 67  1  0
 14 68  1  0
 15 69  1  6
 16 70  1  6
 18 71  1  6
 20 72  1  1
 21 73  1  0
 21 74  1  0
 22 75  1  0
 23 76  1  1
 24 77  1  0
 25 78  1  6
 26 79  1  0
 27 80  1  6
 28 81  1  0
 29 82  1  0
 31 83  1  1
 32 84  1  0
 32 85  1  0
 33 86  1  0
 33 87  1  0
 34 88  1  6
 35 89  1  0
 37 90  1  0
 37 91  1  0
 37 92  1  0
 38 93  1  0
 38 94  1  0
 38 95  1  0
 40 96  1  0
 40 97  1  0
 41 98  1  0
 42 99  1  0
 42100  1  0
 43101  1  0
 43102  1  0
 45103  1  0
 45104  1  0
 45105  1  0
M  END


  Mrv1533004261513442D          

 45 49  0  0  0  0            999 V2000
   -2.6962    0.0341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0071   -0.7301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8244   -0.8429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3307   -0.1916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0198    0.5726    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1480   -0.3044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6543    0.3469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4716    0.2340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3434    1.1111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5008   -1.3814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7301   -2.1739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0473   -2.6369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3959   -2.1305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1983   -2.9315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5838   -2.2757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3035   -3.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8353   -3.6824    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5550   -4.4583    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2571   -4.6035    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5374   -5.3794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3495   -5.5246    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8813   -4.8939    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0056   -6.0101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2859   -6.7860    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8065   -5.8649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3384   -6.4956    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0868   -5.0890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8990   -4.9438    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5086   -3.1969    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0404   -2.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7601   -1.7902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2920   -1.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1041   -1.3047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3844   -2.0807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1965   -2.2259    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8526   -2.7114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4643   -3.2649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7358   -3.5281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0520   -1.6450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4798   -1.0143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1995   -0.2384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3323   -0.8691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1444   -0.7239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6762   -1.3546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0361   -0.6122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 18 27  1  0  0  0  0
 27 28  1  0  0  0  0
 16 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 30 36  1  0  0  0  0
 36 37  1  0  0  0  0
 36 38  1  0  0  0  0
 31 39  1  0  0  0  0
 15 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 39 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 10 44  1  0  0  0  0
 13 44  1  0  0  0  0
 44 45  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0269223

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CC(O)C=C(C)C)C1CCC2(C)C3C(OC4OC(CO)C(O)C(O)C4O)C=C4C(CCC(O)C4(C)C)C3(CO)CCC12C

> <INCHI_IDENTIFIER>
InChI=1S/C36H60O9/c1-19(2)14-21(39)15-20(3)22-10-11-35(7)31-25(44-32-30(43)29(42)28(41)26(17-37)45-32)16-24-23(8-9-27(40)33(24,4)5)36(31,18-38)13-12-34(22,35)6/h14,16,20-23,25-32,37-43H,8-13,15,17-18H2,1-7H3

> <INCHI_KEY>
WCKZLYQEEPCCGL-UHFFFAOYSA-N

> <FORMULA>
C36H60O9

> <MOLECULAR_WEIGHT>
636.867

> <EXACT_MASS>
636.423733512

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
105

> <JCHEM_AVERAGE_POLARIZABILITY>
72.0235078681102

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-{[5-hydroxy-14-(4-hydroxy-6-methylhept-5-en-2-yl)-1-(hydroxymethyl)-6,6,11,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
2.18

> <JCHEM_LOGP>
2.315055139333332

> <ALOGPS_LOGS>
-3.98

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.19476991800122

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.209504873811994

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7448628811745815

> <JCHEM_POLAR_SURFACE_AREA>
160.07

> <JCHEM_REFRACTIVITY>
171.95330000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.66e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{[5-hydroxy-14-(4-hydroxy-6-methylhept-5-en-2-yl)-1-(hydroxymethyl)-6,6,11,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0      -5.033   0.064   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.613  -1.363   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.139  -1.573   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -8.084  -0.358   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -7.504   1.069   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -9.610  -0.568   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -10.555   0.648   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -12.080   0.437   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -9.974   2.074   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.668  -2.579   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.096  -4.058   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.822  -4.922   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.606  -3.977   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.237  -5.472   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.090  -4.248   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.567  -5.696   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.559  -6.874   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -1.036  -8.322   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.480  -8.593   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       1.003 -10.042   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.519 -10.313   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       3.512  -9.135   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.010 -11.219   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       0.534 -12.667   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -1.506 -10.948   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -2.498 -12.125   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -2.029  -9.499   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -3.545  -9.228   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       0.949  -5.967   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       1.942  -4.790   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.419  -3.342   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.412  -2.164   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       3.928  -2.436   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.451  -3.884   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       5.967  -4.155   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       3.458  -5.061   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.600  -6.094   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       3.240  -6.586   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -0.097  -3.071   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       0.896  -1.893   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0       0.372  -0.445   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      -0.620  -1.622   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      -2.136  -1.351   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -3.129  -2.529   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      -3.801  -1.143   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    2   11   44                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   44                                             
CONECT   14   13                                                            
CONECT   15   13   16   39                                                  
CONECT   16   15   17   29                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   27                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   23                                                  
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   20   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   18   28                                                  
CONECT   28   27                                                            
CONECT   29   16   30                                                       
CONECT   30   29   31   36                                                  
CONECT   31   30   32   39                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   30   37   38                                             
CONECT   37   36                                                            
CONECT   38   36                                                            
CONECT   39   31   15   40   42                                             
CONECT   40   39   41                                                       
CONECT   41   40                                                            
CONECT   42   39   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   10   13   45                                             
CONECT   45   44                                                            
MASTER        0    0    0    0    0    0    0    0   45    0   98    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₆H₆₀O₉

Average Mass

636.8670 Da

Monoisotopic Mass

636.42373 Da

IUPAC Name

2-{[5-hydroxy-14-(4-hydroxy-6-methylhept-5-en-2-yl)-1-(hydroxymethyl)-6,6,11,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

2-{[5-hydroxy-14-(4-hydroxy-6-methylhept-5-en-2-yl)-1-(hydroxymethyl)-6,6,11,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CC(CC(O)C=C(C)C)C1CCC2(C)C3C(OC4OC(CO)C(O)C(O)C4O)C=C4C(CCC(O)C4(C)C)C3(CO)CCC12C

InChI Identifier

InChI=1S/C36H60O9/c1-19(2)14-21(39)15-20(3)22-10-11-35(7)31-25(44-32-30(43)29(42)28(41)26(17-37)45-32)16-24-23(8-9-27(40)33(24,4)5)36(31,18-38)13-12-34(22,35)6/h14,16,20-23,25-32,37-43H,8-13,15,17-18H2,1-7H3

InChI Key

WCKZLYQEEPCCGL-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Momordica charantia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cucurbitacins. These are polycyclic compounds containing the tetracyclic cucurbitane nucleus skeleton, 19-(10->9b)-abeo-10alanost-5-ene (also known as 9b-methyl-19-nor lanosta-5-ene), with a variety of oxygenation functionalities at different positions.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Cucurbitacins

Direct Parent

Cucurbitacins

Alternative Parents

Substituents

Cucurbitacin skeleton
Triterpenoid
23-hydroxysteroid
3-hydroxy-delta-5-steroid
3-hydroxysteroid
Hydroxysteroid
Delta-5-steroid
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Oxane
Monosaccharide
Cyclic alcohol
Secondary alcohol
Polyol
Organoheterocyclic compound
Oxacycle
Acetal
Primary alcohol
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.18	ALOGPS
logP	2.32	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-0.74	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	160.07 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	171.95 m³·mol⁻¹	ChemAxon
Polarizability	72.02 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0269223)

MOL for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D MOL for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D SDF for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D-SDF for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

PDB for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D PDB for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

SMILES for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

INCHI for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

Structure for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D Structure for NP0269223 (2-{[7-hydroxy-1-(4-hydroxy-6-methylhept-5-en-2-yl)-9b-(hydroxymethyl)-3a,6,6,11a-tetramethyl-1h,2h,3h,3bh,4h,7h,8h,9h,9ah,10h,11h-cyclopenta[a]phenanthren-4-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)