NP-MRD: Showing NP-Card for 10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione (NP0268435)

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Record Information

Version

2.0

Created at

2022-09-08 13:33:10 UTC

Updated at

2022-09-08 13:33:11 UTC

NP-MRD ID

NP0268435

Secondary Accession Numbers

None

Natural Product Identification

Common Name

10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione

Description

Podosporin A belongs to the class of organic compounds known as enones. Enones are compounds containing the enone functional group, with the structure RC(=O)CR'. 10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione is found in Podospora decipiens. Based on a literature review very few articles have been published on Podosporin A.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082215332D          

 32 35  0  0  0  0            999 V2000
    7.2141   -1.8507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5243   -1.3980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5714   -0.5744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8817   -0.1218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9288    0.7019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1448   -0.4928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0977   -1.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4551   -0.0401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5022    0.7835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8125    1.2362    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8596    2.0598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0756    0.8651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0285    0.0415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2040    0.0289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3439   -0.1209    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9732   -0.6543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8260   -1.4660    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0494   -1.7444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9022   -2.5562    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4200   -1.2110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0040   -1.9235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3538   -0.9251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5672   -0.3993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0621    0.1341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0851    0.9459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8617    1.2243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0089    2.0360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4911    0.6909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.2547    1.0632    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7182   -0.4112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6711   -1.2348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
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  9 10  1  0  0  0  0
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 13 31  1  0  0  0  0
  8 31  1  0  0  0  0
 31 32  2  0  0  0  0
M  END

     RDKit          3D

 68 71  0  0  0  0  0  0  0  0999 V2000
    8.7688    2.4145    0.7485 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7336    1.3436    0.6150 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.9417   -0.5942   -0.3108 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -2.6912    1.5882   -1.5789 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.8613    0.2431    0.5476 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1082   -0.4656    0.9494 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0619   -1.9149    1.1257 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8700   -2.6436    0.5938 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5535   -3.8504    1.4920 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309082215332D          

 32 35  0  0  0  0            999 V2000
    7.2141   -1.8507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0268435

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C\C(=O)C(C)C1=CC(=O)C2=C(OC34CCC(O)C(C)(C)C3CCC(C)C4(C)C2)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C27H36O5/c1-7-8-19(28)16(3)17-13-20(29)18-14-26(6)15(2)9-10-21-25(4,5)22(30)11-12-27(21,26)32-24(18)23(17)31/h7-8,13,15-16,21-22,30H,9-12,14H2,1-6H3/b8-7+

> <INCHI_KEY>
UNXQMRVMBDHLTF-BQYQJAHWSA-N

> <FORMULA>
C27H36O5

> <MOLECULAR_WEIGHT>
440.58

> <EXACT_MASS>
440.256274259

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
48.94168011985421

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
10-hydroxy-6,9,9,12b-tetramethyl-2-[(4E)-3-oxohex-4-en-2-yl]-1,4,5,6,7,8,8a,9,10,11,12,12b-dodecahydro-oxatetraphene-1,4-dione

> <JCHEM_LOGP>
4.975389738666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.373516425395863

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.701873288963025

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9291965773096544

> <JCHEM_POLAR_SURFACE_AREA>
80.67000000000002

> <JCHEM_REFRACTIVITY>
126.17589999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
10-hydroxy-6,9,9,12b-tetramethyl-2-[(4E)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      13.466  -3.455   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.179  -2.610   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.267  -1.072   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.979  -0.227   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      11.067   1.310   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       9.604  -0.920   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.516  -2.457   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.316  -0.075   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.404   1.463   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.117   2.307   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.205   3.845   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.741   1.615   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.653   0.077   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.114   0.054   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.509  -0.226   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.683  -1.221   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.409  -2.737   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.959  -3.256   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.684  -4.771   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       0.784  -2.261   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.008  -3.590   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.661  -1.727   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.059  -0.745   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.116   0.250   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.159   1.766   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.609   2.285   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.883   3.801   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.783   1.290   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.975   2.818   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.209   1.985   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.941  -0.767   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       6.853  -2.305   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   31                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   30                                                  
CONECT   13   12   14   31                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   23   28                                             
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22   23                                             
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   20   15   24                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   15   29   30                                             
CONECT   29   28                                                            
CONECT   30   28   12                                                       
CONECT   31   13    8   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₆O₅

Average Mass

440.5800 Da

Monoisotopic Mass

440.25627 Da

IUPAC Name

10-hydroxy-6,9,9,12b-tetramethyl-2-[(4E)-3-oxohex-4-en-2-yl]-1,4,5,6,7,8,8a,9,10,11,12,12b-dodecahydro-oxatetraphene-1,4-dione

Traditional Name

10-hydroxy-6,9,9,12b-tetramethyl-2-[(4E)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione

CAS Registry Number

Not Available

SMILES

C\C=C\C(=O)C(C)C1=CC(=O)C2=C(OC34CCC(O)C(C)(C)C3CCC(C)C4(C)C2)C1=O

InChI Identifier

InChI=1S/C27H36O5/c1-7-8-19(28)16(3)17-13-20(29)18-14-26(6)15(2)9-10-21-25(4,5)22(30)11-12-27(21,26)32-24(18)23(17)31/h7-8,13,15-16,21-22,30H,9-12,14H2,1-6H3/b8-7+

InChI Key

UNXQMRVMBDHLTF-BQYQJAHWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Podospora decipiens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as enones. Enones are compounds containing the enone functional group, with the structure RC(=O)CR'.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Enones

Alternative Parents

Substituents

Vinylogous ester
Enone
Cyclic alcohol
Acryloyl-group
Secondary alcohol
Ketone
Oxacycle
Organoheterocyclic compound
Organic oxide
Hydrocarbon derivative
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.98	ChemAxon
pKa (Strongest Acidic)	14.7	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	80.67 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	126.18 m³·mol⁻¹	ChemAxon
Polarizability	48.94 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4756122

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5937024

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione (NP0268435)

MOL for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

3D MOL for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

3D SDF for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

3D-SDF for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

PDB for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

3D PDB for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

SMILES for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

INCHI for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

Structure for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)

3D Structure for NP0268435 (10-hydroxy-6,9,9,12b-tetramethyl-2-[(4e)-3-oxohex-4-en-2-yl]-5,6,7,8,8a,10,11,12-octahydro-oxatetraphene-1,4-dione)