NP-MRD: Showing NP-Card for (1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one (NP0268045)

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Record Information

Version

2.0

Created at

2022-09-08 13:02:14 UTC

Updated at

2022-09-08 13:02:14 UTC

NP-MRD ID

NP0268045

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one

Description

(1R,3S,3aR,4aR,5S,7aS,8S,8aR)-8a-hydroxy-3-{[(1R,5S)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-decahydro-1H-indeno[5,6-c]furan-4-one belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one is found in Leucosceptrum canum. Based on a literature review very few articles have been published on (1R,3S,3aR,4aR,5S,7aS,8S,8aR)-8a-hydroxy-3-{[(1R,5S)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-decahydro-1H-indeno[5,6-c]furan-4-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082215022D          

 30 33  0  0  1  0            999 V2000
    1.1809   -3.5477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4358   -2.7631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2428   -2.5916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4243    0.3820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4743    0.7232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9894    1.3906    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1644    1.3906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3206    0.7232    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0906    2.1752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8752    2.4302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6378    0.9521    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1369   -0.0305    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    4.1369   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9233   -1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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  5  4  1  1  0  0  0
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 29 30  1  1  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309082215022D          

 30 33  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0268045

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1CC[C@@H]2[C@@H]1C(=O)[C@H]1[C@](C)(C[C@@H]3[C@@H](O)C=C(C)C3=O)O[C@H](C=C(C)C)[C@@]1(O)[C@H]2C

> <INCHI_IDENTIFIER>
InChI=1S/C25H36O5/c1-12(2)9-19-25(29)15(5)16-8-7-13(3)20(16)22(28)23(25)24(6,30-19)11-17-18(26)10-14(4)21(17)27/h9-10,13,15-20,23,26,29H,7-8,11H2,1-6H3/t13-,15-,16-,17+,18-,19+,20+,23-,24-,25-/m0/s1

> <INCHI_KEY>
ALKDOXASAABMJJ-HPXJQAEZSA-N

> <FORMULA>
C25H36O5

> <MOLECULAR_WEIGHT>
416.558

> <EXACT_MASS>
416.256274259

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
46.67539604767209

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3S,3aR,4aR,5S,7aS,8S,8aR)-8a-hydroxy-3-{[(1R,5S)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-decahydro-1H-indeno[5,6-c]furan-4-one

> <JCHEM_LOGP>
3.5707149180000006

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.286225782158148

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.995853549919595

> <JCHEM_PKA_STRONGEST_BASIC>
-3.089616022731189

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
116.12399999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S,3aR,4aR,5S,7aS,8S,8aR)-8a-hydroxy-3-{[(1R,5S)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       2.204  -6.622   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.680  -5.158   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.187  -4.838   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.220  -1.303   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.126  -0.057   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.792   0.713   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.752   1.350   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.847   2.596   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.307   2.596   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.598   1.350   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.169   4.060   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.634   4.536   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.077   4.966   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.323   4.060   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.787   4.536   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.924   1.777   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.722  -0.057   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.198   1.408   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.627  -1.303   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.722  -2.549   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.924  -4.383   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.429  -3.604   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9   18                                             
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   16                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   10   17                                                  
CONECT   17   16                                                            
CONECT   18    7   19   29                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   26                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   21   27                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27    5   18   30                                             
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₆O₅

Average Mass

416.5580 Da

Monoisotopic Mass

416.25627 Da

IUPAC Name

(1R,3S,3aR,4aR,5S,7aS,8S,8aR)-8a-hydroxy-3-{[(1R,5S)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-decahydro-1H-indeno[5,6-c]furan-4-one

Traditional Name

(1R,3S,3aR,4aR,5S,7aS,8S,8aR)-8a-hydroxy-3-{[(1R,5S)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one

CAS Registry Number

Not Available

SMILES

C[C@H]1CC[C@@H]2[C@@H]1C(=O)[C@H]1[C@](C)(C[C@@H]3[C@@H](O)C=C(C)C3=O)O[C@H](C=C(C)C)[C@@]1(O)[C@H]2C

InChI Identifier

InChI=1S/C25H36O5/c1-12(2)9-19-25(29)15(5)16-8-7-13(3)20(16)22(28)23(25)24(6,30-19)11-17-18(26)10-14(4)21(17)27/h9-10,13,15-20,23,26,29H,7-8,11H2,1-6H3/t13-,15-,16-,17+,18-,19+,20+,23-,24-,25-/m0/s1

InChI Key

ALKDOXASAABMJJ-HPXJQAEZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Leucosceptrum canum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
C-glycosyl compound
Glycosyl compound
Monosaccharide
Cyclic alcohol
Tetrahydrofuran
Tertiary alcohol
Ketone
Cyclic ketone
Secondary alcohol
Dialkyl ether
Ether
Oxacycle
Organoheterocyclic compound
Alcohol
Organic oxide
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.57	ChemAxon
pKa (Strongest Acidic)	13	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	116.12 m³·mol⁻¹	ChemAxon
Polarizability	46.68 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

52937183

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one (NP0268045)

MOL for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

3D MOL for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

3D SDF for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

3D-SDF for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

PDB for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

3D PDB for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

SMILES for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

INCHI for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

Structure for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)

3D Structure for NP0268045 ((1r,3s,3ar,4ar,5s,7as,8s,8ar)-8a-hydroxy-3-{[(1r,5s)-5-hydroxy-3-methyl-2-oxocyclopent-3-en-1-yl]methyl}-3,5,8-trimethyl-1-(2-methylprop-1-en-1-yl)-octahydroindeno[5,6-c]furan-4-one)