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Showing NP-Card for 1-octen-3-ol (NP0267623)

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Record Information
Version2.0
Created at2022-09-08 12:27:46 UTC
Updated at2022-09-08 12:27:46 UTC
NP-MRD IDNP0267623
Secondary Accession NumbersNone
Natural Product Identification
Common Name1-octen-3-ol
Description(R)-oct-1-en-3-ol belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. 1-octen-3-ol is found in Agaricus bisporus, Botrytis cinerea, Chamaecyparis obtusa, Conocephalum conicum, Lavandula angustifolia, Medicago sativa, Mentha pulegium, Mentha rotundifolia, Mosla chinensis, Pueraria montana, Schizonepeta tenuifolia, Vaccinium vitis-idaea and Vitis vinifera. Thus, (R)-oct-1-en-3-ol is considered to be a fatty alcohol lipid molecule (R)-oct-1-en-3-ol is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
Thumb
MOL3D MOLSDFPDBSMILESInChI

MOL for NP0267623 (1-octen-3-ol)


  Mrv1652303202019022D          

 10  9  0  0  1  0            999 V2000
    0.6336   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6349   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3480   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4914   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2059    0.5230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059   -1.1270    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  2  2  0  0  0  0
  5  3  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  4  1  0  0  0  0
  8  7  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  6  0  0  0
M  END
Download

3D MOL for NP0267623 (1-octen-3-ol)

     RDKit          3D

 25 24  0  0  0  0  0  0  0  0999 V2000
    4.3871    0.4015    0.3751 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1304    0.5570    0.7454 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0628   -0.4374    0.4204 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3691   -1.1306   -0.7331 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7656    0.3200    0.3354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4203   -0.5794    0.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6425    0.3085    0.0136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9039   -0.4827   -0.2460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0621    0.4920   -0.2872 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6644   -0.4740   -0.1842 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1470    1.1222    0.6139 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8678    1.4639    1.3193 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0320   -1.1451    1.2803 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0246   -1.8501   -0.5174 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8561    1.0588   -0.4769 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6474    0.8805    1.2862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2867   -0.9904   -0.9690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5025   -1.4061    0.7762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4947    0.9831   -0.8626 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7247    0.9196    0.9378 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0736   -1.2459    0.5285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8206   -0.9222   -1.2521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9983   -0.1240   -0.3224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9655    1.1442   -1.1808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0588    1.1367    0.6340 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  3  2  1  0
  2  1  2  3
  3 13  1  1
  4 14  1  0
  5 15  1  0
  5 16  1  0
  6 17  1  0
  6 18  1  0
  7 19  1  0
  7 20  1  0
  8 21  1  0
  8 22  1  0
  9 23  1  0
  9 24  1  0
  9 25  1  0
  2 12  1  0
  1 10  1  0
  1 11  1  0
M  END
Download

3D SDF for NP0267623 (1-octen-3-ol)


  Mrv1652303202019022D          

 10  9  0  0  1  0            999 V2000
    0.6336   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6349   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3480   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4914   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059   -0.3020    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2059    0.5230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059   -1.1270    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  2  2  0  0  0  0
  5  3  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  4  1  0  0  0  0
  8  7  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0267623

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@](O)(CCCCC)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C8H16O/c1-3-5-6-7-8(9)4-2/h4,8-9H,2-3,5-7H2,1H3/t8-/m0/s1

> <INCHI_KEY>
VSMOENVRRABVKN-QMMMGPOBSA-N

> <FORMULA>
C8H16O

> <MOLECULAR_WEIGHT>
128.212

> <EXACT_MASS>
128.120115134

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
25

> <JCHEM_AVERAGE_POLARIZABILITY>
16.372748388857204

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R)-oct-1-en-3-ol

> <ALOGPS_LOGP>
2.43

> <JCHEM_LOGP>
2.4854761693333334

> <ALOGPS_LOGS>
-1.99

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.487640160517568

> <JCHEM_PKA_STRONGEST_BASIC>
-1.7107061937896155

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
40.1698

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.31e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-octen-3-ol

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for NP0267623 (1-octen-3-ol)

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PDB for NP0267623 (1-octen-3-ol)
HEADER    PROTEIN                                 20-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-MAR-20         0                                  
HETATM    1  C   UNK     0       1.183  -1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.518  -0.564   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.516  -0.564   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.185  -1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.850  -1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.517  -1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.851  -0.564   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       7.851   0.976   0.000  0.00  0.00           O+0
HETATM   10  H   UNK     0       7.851  -2.104   0.000  0.00  0.00           H+0
CONECT    1    3                                                            
CONECT    2    4                                                            
CONECT    3    1    5                                                       
CONECT    4    2    8                                                       
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    4    7    9   10                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   18    0
END

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3D PDB for NP0267623 (1-octen-3-ol)
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SMILES for NP0267623 (1-octen-3-ol)
[H][C@@](O)(CCCCC)C=C
Download
INCHI for NP0267623 (1-octen-3-ol)
InChI=1S/C8H16O/c1-3-5-6-7-8(9)4-2/h4,8-9H,2-3,5-7H2,1H3/t8-/m0/s1
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View in JSmol
Synonyms
ValueSource
1-OCTEN-3-olChEBI
Chemical FormulaC8H16O
Average Mass128.2120 Da
Monoisotopic Mass128.12012 Da
IUPAC Name(3R)-oct-1-en-3-ol
Traditional Name1-octen-3-ol
CAS Registry NumberNot Available
SMILES
[H][C@@](O)(CCCCC)C=C
InChI Identifier
InChI=1S/C8H16O/c1-3-5-6-7-8(9)4-2/h4,8-9H,2-3,5-7H2,1H3/t8-/m0/s1
InChI KeyVSMOENVRRABVKN-QMMMGPOBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Agaricus bisporusLOTUS Database
Botrytis cinereaLOTUS Database
Chamaecyparis obtusaLOTUS Database
Conocephalum conicumLOTUS Database
Lavandula angustifoliaLOTUS Database
Medicago sativaLOTUS Database
Mentha pulegiumLOTUS Database
Mentha rotundifoliaLOTUS Database
Mosla chinensisLOTUS Database
Pueraria montanaLOTUS Database
Schizonepeta tenuifoliaLOTUS Database
Vaccinium vitis-idaeaLOTUS Database
Vitis viniferaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassFatty Acyls  
Sub ClassFatty alcohols  
Direct ParentFatty alcohols  
Alternative Parents
Substituents
  • Fatty alcohol
    • 

  • Secondary alcohol
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Alcohol
    • 

  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.43ALOGPS
logP2.49ChemAxon
logS-2ALOGPS
pKa (Strongest Acidic)17.49ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity40.17 m³·mol⁻¹ChemAxon
Polarizability16.37 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound6992244  
PDB IDNot Available
ChEBI ID39932  
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]