NP-MRD: Showing NP-Card for (2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid (NP0266541)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-08 10:54:55 UTC

Updated at

2022-09-08 10:54:56 UTC

NP-MRD ID

NP0266541

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid

Description

UNII-28F53B514I component UFBPWFODSIJGPL-CRCLSJGQSA-N belongs to the class of organic compounds known as d-alpha-amino acids. These are alpha amino acids which have the D-configuration of the alpha-carbon atom. (2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid is found in Lathyrus tingitanus. Based on a literature review very few articles have been published on UNII-28F53B514I component UFBPWFODSIJGPL-CRCLSJGQSA-N.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 29  0  0  0  0  0  0  0  0999 V2000
    3.6144    1.7012    1.6881 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4891    0.7445    1.2998 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0778    0.4856    0.1228 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7691    1.5411   -0.7543 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9430   -0.8496   -0.3056 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9379   -1.4038   -1.1413 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5626   -1.5184   -0.6145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1325   -0.2713   -0.2021 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4408    0.3232    0.9272 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5417   -0.6811    0.2847 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2407    0.5966    0.7182 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3509    1.5352   -0.3695 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5983    0.2930    1.2253 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7932   -0.5086    2.1896 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7256    0.8891    0.6490 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8250    1.8429   -1.0539 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5941    2.0780   -1.1443 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7207   -1.4973    0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9151   -0.8655   -2.1229 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2617   -2.4540   -1.4195 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4953   -2.2656    0.2128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0690   -1.9654   -1.4438 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2908    0.4551   -1.0068 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3772   -0.3568    1.6673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4005   -1.3168    1.1807 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0670   -1.1979   -0.5317 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6205    1.0181    1.5416 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3801    1.0840   -1.3097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6037    2.2613   -0.3245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2094    0.3029   -0.0327 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  1  0
 11 10  1  0
 10  8  1  0
  8  9  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  0
  3  2  2  0
 11 13  1  0
 13 15  1  0
 13 14  2  0
 12 28  1  0
 12 29  1  0
 11 27  1  1
 10 25  1  0
 10 26  1  0
  8 23  1  6
  9 24  1  0
  7 21  1  0
  7 22  1  0
  6 19  1  0
  6 20  1  0
  5 18  1  0
  4 16  1  0
  4 17  1  0
  2  1  1  0
 15 30  1  0
M  END


  Mrv1652309082212542D          

 14 13  0  0  1  0            999 V2000
    2.2836    2.1434    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    3.3809    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8559    3.3809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.2849    3.3809    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0266541

> <DATABASE_NAME>
NP-MRD

> <SMILES>
N[C@H](C[C@@H](O)CCNC(N)=N)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C7H16N4O3/c8-5(6(13)14)3-4(12)1-2-11-7(9)10/h4-5,12H,1-3,8H2,(H,13,14)(H4,9,10,11)/t4-,5+/m0/s1

> <INCHI_KEY>
UFBPWFODSIJGPL-CRCLSJGQSA-N

> <FORMULA>
C7H16N4O3

> <MOLECULAR_WEIGHT>
204.23

> <EXACT_MASS>
204.122240391

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
20.458687381472693

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,4S)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid

> <JCHEM_LOGP>
-4.249553683899432

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
15.179162041335285

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.2856717455803075

> <JCHEM_PKA_STRONGEST_BASIC>
12.263624092233114

> <JCHEM_POLAR_SURFACE_AREA>
145.45

> <JCHEM_REFRACTIVITY>
60.1064

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,4S)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  N   UNK     0       4.263   4.001   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       5.596   6.311   0.000  0.00  0.00           N+0
HETATM    4  N   UNK     0       6.930   4.001   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      10.931   6.311   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0      13.598   6.311   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      16.266   4.771   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      14.932   2.461   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₇H₁₆N₄O₃

Average Mass

204.2300 Da

Monoisotopic Mass

204.12224 Da

IUPAC Name

(2R,4S)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid

Traditional Name

(2R,4S)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid

CAS Registry Number

Not Available

SMILES

N[C@H](C[C@@H](O)CCNC(N)=N)C(O)=O

InChI Identifier

InChI=1S/C7H16N4O3/c8-5(6(13)14)3-4(12)1-2-11-7(9)10/h4-5,12H,1-3,8H2,(H,13,14)(H4,9,10,11)/t4-,5+/m0/s1

InChI Key

UFBPWFODSIJGPL-CRCLSJGQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lathyrus tingitanus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as d-alpha-amino acids. These are alpha amino acids which have the D-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

D-alpha-amino acids

Alternative Parents

Substituents

D-alpha-amino acid
Medium-chain hydroxy acid
Medium-chain fatty acid
Amino fatty acid
Hydroxy fatty acid
Fatty acid
Fatty acyl
1,3-aminoalcohol
Guanidine
Secondary alcohol
Amino acid
Carboximidamide
Carboxylic acid
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organonitrogen compound
Organooxygen compound
Primary aliphatic amine
Organic oxide
Imine
Organopnictogen compound
Organic nitrogen compound
Primary amine
Carbonyl group
Organic oxygen compound
Amine
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-4.2	ChemAxon
pKa (Strongest Acidic)	2.29	ChemAxon
pKa (Strongest Basic)	12.26	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	145.45 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	60.11 m³·mol⁻¹	ChemAxon
Polarizability	20.46 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

75231161

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

134687319

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid (NP0266541)

MOL for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

3D MOL for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

3D SDF for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

3D-SDF for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

PDB for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

3D PDB for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

SMILES for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

INCHI for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

Structure for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)

3D Structure for NP0266541 ((2r,4s)-2-amino-6-carbamimidamido-4-hydroxyhexanoic acid)