NP-MRD: Showing NP-Card for d-mannopyranose 6-phosphate (NP0265356)

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Record Information

Version

2.0

Created at

2022-09-08 09:18:19 UTC

Updated at

2022-09-08 09:18:19 UTC

NP-MRD ID

NP0265356

Secondary Accession Numbers

None

Natural Product Identification

Common Name

d-mannopyranose 6-phosphate

Description

D-mannose 6-phosphate belongs to the class of organic compounds known as hexose phosphates. These are carbohydrate derivatives containing a hexose substituted by one or more phosphate groups. D-mannose 6-phosphate is an extremely weak basic (essentially neutral) compound (based on its pKa). D-mannose 6-phosphate may be a unique S. Cerevisiae (yeast) metabolite. In humans, D-mannose 6-phosphate is involved in fructose intolerance, hereditary. Outside of the human body, D-mannose 6-phosphate has been detected, but not quantified in, several different foods, such as acorns, nuts, persimmons, shallots, and hard wheats. This could make D-mannose 6-phosphate a potential biomarker for the consumption of these foods. d-mannopyranose 6-phosphate is found in Mycoplasma gallisepticum. d-mannopyranose 6-phosphate was first documented in 1977 (PMID: 908752). The pyranose form of D-mannose 6-phosphate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 29  0  0  0  0  0  0  0  0999 V2000
    3.8108   -0.9673    1.5610 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6733    0.2057    0.6145 P   0  0  0  0  0  5  0  0  0  0  0  0
    4.4932    1.5240    1.2650 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2769   -0.1474   -0.9175 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0301    0.6129    0.4537 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3738   -0.4003   -0.2588 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0510    0.1077   -0.8230 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7646   -0.9636   -1.1007 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1135   -0.7056   -1.0558 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5748    0.1168   -2.0719 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6028   -0.1659    0.2542 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3609   -1.0782    0.9681 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4118    0.2567    1.1061 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7619   -0.9078    1.5195 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5278    1.0779    0.1736 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3791    1.9267   -0.5536 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1327    1.6895    2.1747 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3826   -1.1240   -1.0514 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0673   -0.6810   -1.0915 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2411   -1.2957    0.3655 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3184    0.6930   -1.7268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6282   -1.6891   -1.2036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5593    0.2083   -1.9194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2150    0.7594    0.1105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2723   -1.9649    0.5140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7176    0.8168    2.0013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3210   -1.7117    1.3513 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2467    1.6365    0.7197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8873    2.1705   -1.3786 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  2  1  0
  2  3  1  0
  2  4  1  0
  2  1  2  0
  7 15  1  0
 15 16  1  0
 15 13  1  0
 13 14  1  0
 13 11  1  0
 11 12  1  0
 11  9  1  0
 10 23  1  0
  9 22  1  6
  7 21  1  6
  6 19  1  0
  6 20  1  0
  3 17  1  0
  4 18  1  0
 15 28  1  1
 16 29  1  0
 13 26  1  1
 14 27  1  0
 11 24  1  6
 12 25  1  0
M  END

 
  Mrv0541 02241222482D          
 
 16 16  0  0  1  0            999 V2000
   14.3089  -12.0686    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   15.1352  -12.0723    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4827  -12.0686    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3089  -11.2049    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3015  -12.8948    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.7681  -11.5417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4731  -11.9511    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   16.4731  -12.7736    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   17.1894  -11.5417    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.1894  -13.1905    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.7681  -13.1905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.9095  -11.9511    0.0000 C   0  0  3  0  0  0  0  0  0  0  0  0
   17.9095  -12.7736    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   17.1894  -14.0129    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.6221  -11.5417    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.6221  -13.1905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  1  4  1  0  0  0  0
  1  5  2  0  0  0  0
  2  6  1  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  8 10  1  0  0  0  0
  8 11  1  6  0  0  0
  9 12  1  0  0  0  0
 10 13  1  0  0  0  0
 10 14  1  1  0  0  0
 12 15  1  4  0  0  0
 13 16  1  1  0  0  0
 12 13  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0265356

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6?/m1/s1

> <INCHI_KEY>
NBSCHQHZLSJFNQ-QTVWNMPRSA-N

> <FORMULA>
C6H13O9P

> <MOLECULAR_WEIGHT>
260.1358

> <EXACT_MASS>
260.029718526

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_AVERAGE_POLARIZABILITY>
20.58865044592404

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4S,5S)-3,4,5,6-tetrahydroxyoxan-2-yl]methoxy}phosphonic acid

> <ALOGPS_LOGP>
-2.06

> <JCHEM_LOGP>
-3.056105249333333

> <ALOGPS_LOGS>
-0.92

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.248752256962443

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.222936327751123

> <JCHEM_PKA_STRONGEST_BASIC>
-3.64935696086094

> <JCHEM_POLAR_SURFACE_AREA>
156.91

> <JCHEM_REFRACTIVITY>
46.796299999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.14e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
mannose 6-phosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    MOLECULE:                                                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  P   UNK     0      26.710 -22.528   0.000  0.00  0.00           P+0
HETATM    2  O   UNK     0      28.252 -22.535   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      25.168 -22.528   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      26.710 -20.916   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      26.696 -24.070   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      29.434 -21.545   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      30.750 -22.309   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      30.750 -23.844   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      32.087 -21.545   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      32.087 -24.622   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      29.434 -24.622   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      33.431 -22.309   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      33.431 -23.844   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      32.087 -26.157   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      34.761 -21.545   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      34.761 -24.622   0.000  0.00  0.00           O+0
CONECT    1    2    3    4    5                                             
CONECT    2    1    6                                                       
CONECT    3    1                                                            
CONECT    4    1                                                            
CONECT    5    1                                                            
CONECT    6    2    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7   10   11                                                  
CONECT    9    7   12                                                       
CONECT   10    8   13   14                                                  
CONECT   11    8                                                            
CONECT   12    9   15   13                                                  
CONECT   13   10   16   12                                                  
CONECT   14   10                                                            
CONECT   15   12                                                            
CONECT   16   13                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Value	Source
D-Mannose 6-phosphoric acid	Generator
Mannose-6-phosphate disodium salt	MeSH
Mannose-6-phosphate sodium salt, (D)-isomer	MeSH
Mannose-6-phosphate	MeSH
Mannose-6-phosphate dilithium salt	MeSH

Chemical Formula

C₆H₁₃O₉P

Average Mass

260.1358 Da

Monoisotopic Mass

260.02972 Da

IUPAC Name

{[(2R,3S,4S,5S)-3,4,5,6-tetrahydroxyoxan-2-yl]methoxy}phosphonic acid

Traditional Name

mannose 6-phosphate

CAS Registry Number

Not Available

SMILES

OC1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6?/m1/s1

InChI Key

NBSCHQHZLSJFNQ-QTVWNMPRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Mycoplasma gallisepticum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hexose phosphates. These are carbohydrate derivatives containing a hexose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Hexose phosphates

Alternative Parents

Substituents

Hexose phosphate
Monosaccharide phosphate
Monoalkyl phosphate
Organic phosphoric acid derivative
Alkyl phosphate
Oxane
Phosphoric acid ester
Hemiacetal
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Hydrocarbon derivative
Alcohol
Organic oxide
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

D-hexopyranose 6-phosphate (CHEBI:48066 )
D-mannose 6-phosphate (CHEBI:48066 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.1	ALOGPS
logP	-3.1	ChemAxon
logS	-0.92	ALOGPS
pKa (Strongest Acidic)	1.22	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	156.91 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	46.8 m³·mol⁻¹	ChemAxon
Polarizability	20.59 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB030772

KNApSAcK ID

C00007307

Chemspider ID

Not Available

KEGG Compound ID

C00275

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Mannose_6-phosphate

METLIN ID

Not Available

PubChem Compound

65127

PDB ID

Not Available

ChEBI ID

48066

Good Scents ID

Not Available

References

General References

Kaplan A, Fischer D, Achord D, Sly W: Phosphohexosyl recognition is a general characteristic of pinocytosis of lysosomal glycosidases by human fibroblasts. J Clin Invest. 1977 Nov;60(5):1088-93. [PubMed:908752 ]
LOTUS database [Link]

Showing NP-Card for d-mannopyranose 6-phosphate (NP0265356)

MOL for NP0265356 (d-mannopyranose 6-phosphate)

3D MOL for NP0265356 (d-mannopyranose 6-phosphate)

3D SDF for NP0265356 (d-mannopyranose 6-phosphate)

3D-SDF for NP0265356 (d-mannopyranose 6-phosphate)

PDB for NP0265356 (d-mannopyranose 6-phosphate)

3D PDB for NP0265356 (d-mannopyranose 6-phosphate)

SMILES for NP0265356 (d-mannopyranose 6-phosphate)

INCHI for NP0265356 (d-mannopyranose 6-phosphate)

Structure for NP0265356 (d-mannopyranose 6-phosphate)

3D Structure for NP0265356 (d-mannopyranose 6-phosphate)