NP-MRD: Showing NP-Card for (1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile (NP0265191)

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Record Information

Version

2.0

Created at

2022-09-08 09:05:13 UTC

Updated at

2022-09-08 09:05:13 UTC

NP-MRD ID

NP0265191

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile

Description

Passibiflorin belongs to the class of organic compounds known as cyanogenic glycosides. These are glycosides in which the aglycone moiety contains a cyanide group. (1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile is found in Passiflora lutea and Passiflora talamancensis. (1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile was first documented in 1989 (PMID: 2487786). Based on a literature review a small amount of articles have been published on Passibiflorin (PMID: 10380623) (PMID: 11853745).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082211052D          

 30 32  0  0  1  0            999 V2000
    3.3115   -5.5815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8266   -4.9141    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1622   -4.1604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6773   -3.4930    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0128   -2.7393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5279   -2.0718    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7029   -2.0718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4480   -1.2872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1154   -0.8023    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5634   -0.1892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0113    0.4239    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6674   -0.1892    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4744   -0.3607    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0264    0.2524    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8334    0.0808    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3854    0.6939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1924    0.5224    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0883   -0.7038    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8953   -0.8753    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5363   -1.3169    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7912   -2.1015    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7293   -1.1454    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1773   -1.7585    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7828   -1.2872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8568   -3.5792    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3719   -2.9118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5212   -4.3329    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7007   -4.4191    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0061   -5.0003    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6706   -5.7540    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  3  0  0  0  0
  9 12  1  1  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  1  0  0  0
  9 24  1  0  0  0  0
  6 24  1  0  0  0  0
  4 25  1  0  0  0  0
 25 26  1  1  0  0  0
 25 27  1  0  0  0  0
 27 28  1  6  0  0  0
 27 29  1  0  0  0  0
  2 29  1  0  0  0  0
 29 30  1  1  0  0  0
M  END

     RDKit          3D

 57 59  0  0  0  0  0  0  0  0999 V2000
   -3.9916    2.3492   -0.8393 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8055    1.1330   -1.1482 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0738    0.0713   -1.6400 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1248   -0.4081   -0.7648 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0294    0.4096   -0.7996 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8648   -0.1559   -1.2189 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1755    0.5008   -2.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1302    0.2649   -2.2219 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3862   -0.5886   -1.0060 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1878   -1.9984   -1.3680 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0277   -3.1096   -1.6645 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6096   -0.3463   -0.4520 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7394   -1.0298    0.7308 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9274   -0.1307    1.7775 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9795    0.7424    1.5420 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5297    2.0201    0.8843 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6129    2.6274    1.7459 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1086    0.0767    0.7789 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3338    0.6990    1.0736 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1395   -1.3717    1.2117 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2973   -2.0043    0.8103 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8943   -2.0348    0.6710 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6343   -3.1660    1.4151 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2133   -0.1728   -0.1412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6913   -0.5506    0.6414 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2760   -1.7105    1.2617 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2016   -0.5853    0.5426 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7908   -0.8971    1.7506 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6416    0.7805    0.0558 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.0096    0.7411   -0.2415 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0497    2.4288   -1.3868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5786    3.2780   -1.1019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8606    2.4297    0.2782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5287    1.4206   -1.9568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8938   -1.4617   -1.0988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0518   -1.2341   -1.4630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5783    1.0984   -3.1317 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9469    0.5888   -2.8572 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8409   -1.6280    0.9868 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3965    1.0237    2.5362 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1666    1.9016   -0.1348 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4134    2.6997    0.8518 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4241    3.5280    1.3637 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8969    0.1288   -0.3030 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6277    1.2600    0.2875 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0980   -1.3501    2.3401 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9775   -1.9665    1.5322 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0985   -2.2956   -0.3852 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5895   -2.9599    2.3702 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0149   -0.8568    0.6692 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3781    0.8819    0.1993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3747    0.2998    1.2717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9524   -2.4414    1.2390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5162   -1.3146   -0.2315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7757   -0.7928    1.6270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5206    1.5073    0.8908 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2336    1.6709   -0.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6 24  1  0
 24  9  1  0
  9 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 15 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
  9  8  1  0
  8  7  2  0
  9 10  1  6
 10 11  3  0
  4 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  1  0
 29  2  1  0
  7  6  1  0
 22 13  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  2 34  1  6
  4 35  1  6
  6 36  1  6
 24 50  1  0
 24 51  1  0
 13 39  1  1
 15 40  1  1
 16 41  1  0
 16 42  1  0
 17 43  1  0
 18 44  1  6
 19 45  1  0
 20 46  1  1
 21 47  1  0
 22 48  1  6
 23 49  1  0
  8 38  1  0
  7 37  1  0
 25 52  1  1
 26 53  1  0
 27 54  1  6
 28 55  1  0
 29 56  1  1
 30 57  1  0
M  END


  Mrv1652309082211052D          

 30 32  0  0  1  0            999 V2000
    3.3115   -5.5815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8266   -4.9141    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1622   -4.1604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6773   -3.4930    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0128   -2.7393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5279   -2.0718    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7029   -2.0718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4480   -1.2872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1154   -0.8023    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5634   -0.1892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0113    0.4239    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6674   -0.1892    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4744   -0.3607    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0264    0.2524    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8334    0.0808    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3854    0.6939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1924    0.5224    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0883   -0.7038    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8953   -0.8753    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5363   -1.3169    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7912   -2.1015    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7293   -1.1454    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1773   -1.7585    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7828   -1.2872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8568   -3.5792    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3719   -2.9118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5212   -4.3329    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7007   -4.4191    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0061   -5.0003    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6706   -5.7540    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  3  0  0  0  0
  9 12  1  1  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
 13 22  1  0  0  0  0
 22 23  1  1  0  0  0
  9 24  1  0  0  0  0
  6 24  1  0  0  0  0
  4 25  1  0  0  0  0
 25 26  1  1  0  0  0
 25 27  1  0  0  0  0
 27 28  1  6  0  0  0
 27 29  1  0  0  0  0
  2 29  1  0  0  0  0
 29 30  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0265191

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1O[C@@H](O[C@@H]2C[C@](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)(C=C2)C#N)[C@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C18H27NO11/c1-7-10(21)12(23)14(25)16(27-7)28-8-2-3-18(4-8,6-19)30-17-15(26)13(24)11(22)9(5-20)29-17/h2-3,7-17,20-26H,4-5H2,1H3/t7-,8+,9-,10-,11-,12+,13+,14-,15-,16+,17+,18-/m1/s1

> <INCHI_KEY>
WSDAOKMCDDRLAL-OZCVSGGTSA-N

> <FORMULA>
C18H27NO11

> <MOLECULAR_WEIGHT>
433.41

> <EXACT_MASS>
433.158410693

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
41.951130173318504

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4R)-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile

> <JCHEM_LOGP>
-3.404176472333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.4407269534559

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.914833217801426

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810843926793797

> <JCHEM_POLAR_SURFACE_AREA>
202.32

> <JCHEM_REFRACTIVITY>
95.49560000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R)-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       6.182 -10.419   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.276  -9.173   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.903  -7.766   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.998  -6.520   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       5.624  -5.113   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       4.719  -3.867   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.179  -3.867   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.703  -2.403   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.949  -1.498   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.918  -0.353   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       1.888   0.791   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0       4.979  -0.353   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.486  -0.673   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       7.516   0.471   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       9.022   0.151   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.053   1.295   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      11.559   0.975   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       9.498  -1.314   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      11.005  -1.634   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.468  -2.458   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.944  -3.923   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.961  -2.138   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.931  -3.282   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.195  -2.403   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.466  -6.681   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       2.561  -5.435   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       2.840  -8.088   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       1.308  -8.249   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       3.745  -9.334   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.118 -10.741   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   29                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   25                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   24                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   12   24                                             
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    9   13                                                       
CONECT   13   12   14   22                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   15   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   13   23                                                  
CONECT   23   22                                                            
CONECT   24    9    6                                                       
CONECT   25    4   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27    2   30                                                  
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

View in JSmol

Synonyms

Value	Source
1-(Glucopyranosyloxy)-4-(6-deoxy-gulopyranosyloxy)-2-cyclopentene-1-carbonitrile	MeSH

Chemical Formula

C₁₈H₂₇NO₁₁

Average Mass

433.4100 Da

Monoisotopic Mass

433.15841 Da

IUPAC Name

(1S,4R)-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile

Traditional Name

(1S,4R)-1-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile

CAS Registry Number

Not Available

SMILES

C[C@H]1O[C@@H](O[C@@H]2C[C@](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)(C=C2)C#N)[C@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C18H27NO11/c1-7-10(21)12(23)14(25)16(27-7)28-8-2-3-18(4-8,6-19)30-17-15(26)13(24)11(22)9(5-20)29-17/h2-3,7-17,20-26H,4-5H2,1H3/t7-,8+,9-,10-,11-,12+,13+,14-,15-,16+,17+,18-/m1/s1

InChI Key

WSDAOKMCDDRLAL-OZCVSGGTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Passiflora lutea L.	LOTUS Database	35616633
Passiflora talamancensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyanogenic glycosides. These are glycosides in which the aglycone moiety contains a cyanide group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Cyanogenic glycosides

Alternative Parents

Substituents

Cyanogenic glycoside
O-glycosyl compound
Monosaccharide
Oxane
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Nitrile
Carbonitrile
Acetal
Primary alcohol
Alcohol
Organonitrogen compound
Organopnictogen compound
Organic nitrogen compound
Hydrocarbon derivative
Cyanide
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.4	ChemAxon
pKa (Strongest Acidic)	11.91	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	202.32 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	95.5 m³·mol⁻¹	ChemAxon
Polarizability	41.95 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101182023

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Petruccioli M, Brimer L, Cicalini AR, Pulci V, Federici F: Production and properties of the linamarase and amygdalase activities of Penicillium aurantiogriseum P35. Biosci Biotechnol Biochem. 1999 May;63(5):805-12. doi: 10.1271/bbb.63.805. [PubMed:10380623 ]
Jaroszewski JW, Olafsdottir ES, Wellendorph P, Christensen J, Franzyk H, Somanadhan B, Budnik BA, Jorgensen LB, Clausen V: Cyanohydrin glycosides of Passiflora: distribution pattern, a saturated cyclopentane derivative from P. guatemalensis, and formation of pseudocyanogenic alpha-hydroxyamides as isolation artefacts. Phytochemistry. 2002 Mar;59(5):501-11. doi: 10.1016/s0031-9422(01)00485-x. [PubMed:11853745 ]
Olafsdottir ES, Cornett C, Jaroszewski JW: Cyclopentenoid cyanohydrin glycosides with unusual sugar residues. Acta Chem Scand (Cph). 1989 Jan;43(1):51-5. doi: 10.3891/acta.chem.scand.43-0051. [PubMed:2487786 ]
LOTUS database [Link]

Showing NP-Card for (1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile (NP0265191)

MOL for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

3D MOL for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

3D SDF for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

3D-SDF for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

PDB for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

3D PDB for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

SMILES for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

INCHI for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

Structure for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)

3D Structure for NP0265191 ((1s,4r)-1-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}cyclopent-2-ene-1-carbonitrile)