NP-MRD: Showing NP-Card for (1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one (NP0264802)

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Record Information

Version

2.0

Created at

2022-09-08 08:33:21 UTC

Updated at

2022-09-08 08:33:21 UTC

NP-MRD ID

NP0264802

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one

Description

(1S,4S,5R,8S,10S,13S,14R,16R,17S,18R,19S,20R)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]Tetracosan-23-one belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. (1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one is found in Vaccinium myrtillus. Based on a literature review very few articles have been published on (1S,4S,5R,8S,10S,13S,14R,16R,17S,18R,19S,20R)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]Tetracosan-23-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082210332D          

 32 37  0  0  1  0            999 V2000
    3.1500   -1.2737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 32 12  1  6  0  0  0
  2 32  1  0  0  0  0
  7 32  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309082210332D          

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  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
  7 14  1  1  0  0  0
 14 15  2  0  0  0  0
 12 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 19 18  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 27 26  1  1  0  0  0
 20 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 19 30  1  0  0  0  0
 10 30  1  0  0  0  0
 30 31  1  1  0  0  0
 32 12  1  6  0  0  0
  2 32  1  0  0  0  0
  7 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0264802

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@@]23CC[C@]4(C)[C@@](OC2=O)([C@@H]3[C@H]1C)[C@H](O)C[C@@H]1[C@@]2(C)CC[C@H](O)C[C@@H]2CC[C@@]41C

> <INCHI_IDENTIFIER>
InChI=1S/C28H44O4/c1-16-6-11-27-13-12-26(5)25(4)10-7-18-14-19(29)8-9-24(18,3)20(25)15-21(30)28(26,32-23(27)31)22(27)17(16)2/h16-22,29-30H,6-15H2,1-5H3/t16-,17+,18+,19+,20-,21-,22-,24+,25-,26+,27+,28+/m1/s1

> <INCHI_KEY>
UHMOZKAOIWBLIZ-RYDMNKFPSA-N

> <FORMULA>
C28H44O4

> <MOLECULAR_WEIGHT>
444.656

> <EXACT_MASS>
444.323959897

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
52.0900825988403

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4S,5R,8S,10S,13S,14R,16R,17S,18R,19S,20R)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracosan-23-one

> <JCHEM_LOGP>
4.752632697333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.29639617939102

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.931626937977747

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3569555958486816

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
123.29869999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4S,5R,8S,10S,13S,14R,16R,17S,18R,19S,20R)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracosan-23-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       5.880  -2.378   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.737  -1.417   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.214  -2.285   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.161  -3.824   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.908  -1.469   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.962   0.070   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.322   0.793   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.199   2.153   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.795   2.091   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.447   0.606   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.289   1.896   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.557  -0.780   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       4.153  -1.701   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.830  -0.746   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       1.368  -1.228   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       6.464  -2.088   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.755  -3.455   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       8.022  -2.076   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.779  -0.726   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.319  -0.724   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.551  -2.059   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.091  -2.056   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.631  -2.054   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      13.399  -0.719   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      14.939  -0.717   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      12.628   0.613   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.088   0.611   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.316   1.944   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.776   1.941   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       8.008   0.606   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.167   2.138   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.628  -0.023   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   32                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   14   32                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   30                                             
CONECT   11   10                                                            
CONECT   12   10   13   16   32                                             
CONECT   13   12   14                                                       
CONECT   14   13    7   15                                                  
CONECT   15   14                                                            
CONECT   16   12   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   30                                                  
CONECT   20   19   21   22   27                                             
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   20   28                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   19   10   31                                             
CONECT   31   30                                                            
CONECT   32   12    2    7                                                  
MASTER        0    0    0    0    0    0    0    0   32    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₄₄O₄

Average Mass

444.6560 Da

Monoisotopic Mass

444.32396 Da

IUPAC Name

(1S,4S,5R,8S,10S,13S,14R,16R,17S,18R,19S,20R)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracosan-23-one

Traditional Name

(1S,4S,5R,8S,10S,13S,14R,16R,17S,18R,19S,20R)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0^{1,18}.0^{4,17}.0^{5,14}.0^{8,13}]tetracosan-23-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC[C@@]23CC[C@]4(C)[C@@](OC2=O)([C@@H]3[C@H]1C)[C@H](O)C[C@@H]1[C@@]2(C)CC[C@H](O)C[C@@H]2CC[C@@]41C

InChI Identifier

InChI=1S/C28H44O4/c1-16-6-11-27-13-12-26(5)25(4)10-7-18-14-19(29)8-9-24(18,3)20(25)15-21(30)28(26,32-23(27)31)22(27)17(16)2/h16-22,29-30H,6-15H2,1-5H3/t16-,17+,18+,19+,20-,21-,22-,24+,25-,26+,27+,28+/m1/s1

InChI Key

UHMOZKAOIWBLIZ-RYDMNKFPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Vaccinium myrtillus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Gamma butyrolactones

Direct Parent

Gamma butyrolactones

Alternative Parents

Substituents

Oxepane
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Oxacycle
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.75	ChemAxon
pKa (Strongest Acidic)	13.93	ChemAxon
pKa (Strongest Basic)	-1.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	123.3 m³·mol⁻¹	ChemAxon
Polarizability	52.09 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163191286

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one (NP0264802)

MOL for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

3D MOL for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

3D SDF for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

3D-SDF for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

PDB for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

3D PDB for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

SMILES for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

INCHI for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

Structure for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)

3D Structure for NP0264802 ((1s,4s,5r,8s,10s,13s,14r,16r,17s,18r,19s,20r)-10,16-dihydroxy-4,5,13,19,20-pentamethyl-24-oxahexacyclo[15.5.2.0¹,¹⁸.0⁴,¹⁷.0⁵,¹⁴.0⁸,¹³]tetracosan-23-one)