NP-MRD: Showing NP-Card for 2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid (NP0264445)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-08 07:58:26 UTC

Updated at

2022-09-08 07:58:26 UTC

NP-MRD ID

NP0264445

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid

Description

SCHEMBL17768457 belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. 2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid is found in Lentinula edodes. Based on a literature review very few articles have been published on SCHEMBL17768457.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
   -4.5808    1.2809   -0.3611 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0405    0.1002    0.3172 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5548    0.1770    0.1710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8233   -0.9717    0.8179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3407   -0.8048    0.6214 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5158   -1.7550    1.1403 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0755    0.1875   -0.0052 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3743    0.6374   -0.3609 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4236   -0.2990    0.1760 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8198    0.1100   -0.1585 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5440   -0.2894   -1.2499 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7338    0.3188   -1.1522 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.7704    1.0748   -0.0464 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5980    0.9480    0.5640 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5518    0.7255   -1.8424 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5777    1.2049   -2.3743 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5152    0.2459   -2.6333 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6505   -1.1128   -0.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3661   -2.2571    0.1564 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5620   -0.9850   -1.2964 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2638    1.3515   -1.3361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3867    2.1493    0.1825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3066    0.1818    1.3954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2823    0.3002   -0.8924 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2323    1.1073    0.7091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0703   -1.1029    1.8710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0674   -1.9093    0.2516 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5784   -1.8241    2.1469 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4964    1.6560    0.1046 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2811   -1.3034   -0.2697 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3416   -0.3540    1.3010 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2148   -0.9536   -2.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5818    1.6982    0.3324 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2629    1.3998    1.4685 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5029   -0.7083   -3.0027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2317   -0.2247   -1.3598 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
  8 15  1  0
 15 17  1  0
 15 16  2  0
  2 18  1  0
 18 20  1  0
 18 19  2  0
 14 10  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  1
  3 24  1  0
  3 25  1  0
  4 26  1  0
  4 27  1  0
  6 28  1  0
  8 29  1  1
  9 30  1  0
  9 31  1  0
 11 32  1  0
 13 33  1  0
 14 34  1  0
 17 35  1  0
 20 36  1  0
M  END


  Mrv1652309082209582D          

 20 20  0  0  0  0            999 V2000
    0.6078   -3.2106    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6078   -4.0356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1067   -4.4481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8211   -4.0356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5356   -4.4481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5356   -5.2731    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2501   -4.0356    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9645   -4.4481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6790   -4.0356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3935   -4.4481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4797   -5.2686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2867   -5.4401    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6992   -4.7256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1472   -4.1125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9645   -5.2731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6790   -5.6856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2501   -5.6856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3223   -4.4481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0368   -4.0356    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3223   -5.2731    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  4  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 10 14  1  0  0  0  0
  8 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
  2 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0264445

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NC(CCC(O)=NC(CC1=CN=CN1)C(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H16N4O5/c12-7(10(17)18)1-2-9(16)15-8(11(19)20)3-6-4-13-5-14-6/h4-5,7-8H,1-3,12H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)

> <INCHI_KEY>
PXVCMZCJAUJLJP-UHFFFAOYSA-N

> <FORMULA>
C11H16N4O5

> <MOLECULAR_WEIGHT>
284.272

> <EXACT_MASS>
284.112069631

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
26.71063089823931

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-amino-4-{[1-carboxy-2-(1H-imidazol-5-yl)ethyl]-C-hydroxycarbonimidoyl}butanoic acid

> <JCHEM_LOGP>
-5.708780397784379

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.6576168298204563

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.669725847692452

> <JCHEM_PKA_STRONGEST_BASIC>
9.536659161642943

> <JCHEM_POLAR_SURFACE_AREA>
161.89

> <JCHEM_REFRACTIVITY>
66.6685

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-amino-4-{[1-carboxy-2-(3H-imidazol-4-yl)ethyl]-C-hydroxycarbonimidoyl}butanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  N   UNK     0       1.135  -5.993   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       1.135  -7.533   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.199  -8.303   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.533  -7.533   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.866  -8.303   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -2.866  -9.843   0.000  0.00  0.00           O+0
HETATM    7  N   UNK     0      -4.200  -7.533   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      -5.534  -8.303   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -6.867  -7.533   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -8.201  -8.303   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -8.362  -9.835   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      -9.868 -10.155   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0     -10.638  -8.821   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0      -9.608  -7.677   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0      -5.534  -9.843   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -6.867 -10.613   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      -4.200 -10.613   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.468  -8.303   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       3.802  -7.533   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       2.468  -9.843   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   18                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   15                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   14                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   10                                                       
CONECT   15    8   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18    2   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₁₆N₄O₅

Average Mass

284.2720 Da

Monoisotopic Mass

284.11207 Da

IUPAC Name

2-amino-4-{[1-carboxy-2-(1H-imidazol-5-yl)ethyl]-C-hydroxycarbonimidoyl}butanoic acid

Traditional Name

2-amino-4-{[1-carboxy-2-(3H-imidazol-4-yl)ethyl]-C-hydroxycarbonimidoyl}butanoic acid

CAS Registry Number

Not Available

SMILES

NC(CCC(O)=NC(CC1=CN=CN1)C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C11H16N4O5/c12-7(10(17)18)1-2-9(16)15-8(11(19)20)3-6-4-13-5-14-6/h4-5,7-8H,1-3,12H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)

InChI Key

PXVCMZCJAUJLJP-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lentinus edodes	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Gamma-glutamyl alpha-amino acid
Histidine or derivatives
Glutamine or derivatives
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Alpha-amino acid
Alpha-amino acid or derivatives
Imidazolyl carboxylic acid derivative
Dicarboxylic acid or derivatives
Fatty amide
N-acyl-amine
Fatty acyl
Azole
Imidazole
Heteroaromatic compound
Secondary carboxylic acid amide
Amino acid or derivatives
Carboxamide group
Amino acid
Organoheterocyclic compound
Azacycle
Carboxylic acid
Primary amine
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Amine
Carbonyl group
Organic nitrogen compound
Primary aliphatic amine
Organonitrogen compound
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-5.7	ChemAxon
pKa (Strongest Acidic)	1.67	ChemAxon
pKa (Strongest Basic)	9.54	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	161.89 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	66.67 m³·mol⁻¹	ChemAxon
Polarizability	26.71 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

3198495

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3978834

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid (NP0264445)

MOL for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

3D MOL for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

3D SDF for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

3D-SDF for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

PDB for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

3D PDB for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

SMILES for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

INCHI for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

Structure for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)

3D Structure for NP0264445 (2-amino-4-{[1-carboxy-2-(3h-imidazol-4-yl)ethyl]-c-hydroxycarbonimidoyl}butanoic acid)