NP-MRD: Showing NP-Card for (3r)-3-hydroxy-11-oxododecanoic acid (NP0264362)

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Record Information

Version

2.0

Created at

2022-09-08 07:52:08 UTC

Updated at

2022-09-08 07:52:08 UTC

NP-MRD ID

NP0264362

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r)-3-hydroxy-11-oxododecanoic acid

Description

(3R)-3-hydroxy-11-oxododecanoic acid belongs to the class of organic compounds known as medium-chain hydroxy acids and derivatives. These are hydroxy acids with a 6 to 12 carbon atoms long side chain. (3r)-3-hydroxy-11-oxododecanoic acid is found in Blepharizonia plumosa. Based on a literature review very few articles have been published on (3R)-3-hydroxy-11-oxododecanoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 37  0  0  0  0  0  0  0  0999 V2000
    5.5528    1.5569   -0.2680 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7709    0.3135   -0.4328 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3434    0.0552   -1.5346 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5153   -0.5907    0.7086 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1657   -0.3570    1.3060 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1073   -0.5966    0.2683 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7147   -0.3678    0.8355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2623   -0.6344   -0.2893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7106   -0.4146    0.2254 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5859   -0.6919   -0.9222 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0441   -0.6441   -0.8159 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4837   -1.6118    0.1432 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7412    0.6031   -0.4609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4895    1.1708    0.8566 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9137    0.5601    1.7733 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9330    2.4867    1.0803 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7655    1.7505    0.8067 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0050    2.4502   -0.6597 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4981    1.4511   -0.8169 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2765   -0.3746    1.4957 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6156   -1.6532    0.3946 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0987    0.7147    1.6001 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0023   -0.9524    2.2087 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1700   -1.5965   -0.1969 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2373    0.1410   -0.5342 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5675   -1.0624    1.6783 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6600    0.6950    1.1746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1219   -1.6638   -0.6410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0414    0.0556   -1.1255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6743    0.6577    0.5359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8484   -1.0777    1.0800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2637   -0.0248   -1.7968 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3192   -1.7244   -1.3357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5126   -1.0200   -1.7771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5725   -2.4863   -0.2804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8538    0.3543   -0.4729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6850    1.3846   -1.2783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0095    3.1442    0.3168 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 16  1  0
 14 15  2  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  5 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  0
  8 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 11 34  1  6
 12 35  1  0
 13 36  1  0
 13 37  1  0
 16 38  1  0
M  END


  Mrv1652309082209522D          

 16 15  0  0  1  0            999 V2000
    5.4730    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875    2.7474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6164    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3309    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7599    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4743    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1888    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9033    3.5724    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.9033    2.7474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.6177    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0467    3.9849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    2.7474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0264362

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)CCCCCCC[C@@H](O)CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C12H22O4/c1-10(13)7-5-3-2-4-6-8-11(14)9-12(15)16/h11,14H,2-9H2,1H3,(H,15,16)/t11-/m1/s1

> <INCHI_KEY>
KGKIGWBYVVWXME-LLVKDONJSA-N

> <FORMULA>
C12H22O4

> <MOLECULAR_WEIGHT>
230.304

> <EXACT_MASS>
230.151809188

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
26.32521294684243

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R)-3-hydroxy-11-oxododecanoic acid

> <JCHEM_LOGP>
1.8123121433333327

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.28847910969736

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.671850167041383

> <JCHEM_PKA_STRONGEST_BASIC>
-2.798587426320899

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
60.8106

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3R)-3-hydroxy-11-oxododecanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      10.216   7.438   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.550   6.668   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      11.550   5.128   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      12.884   7.438   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.217   6.668   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      15.551   7.438   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      16.885   6.668   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      18.218   7.438   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      19.552   6.668   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      20.886   7.438   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      22.219   6.668   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      22.219   5.128   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      23.553   7.438   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      24.887   6.668   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      26.220   7.438   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      24.887   5.128   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   30    0
END

View in JSmol

Synonyms

Value	Source
(3R)-3-Hydroxy-11-oxododecanoate	Generator

Chemical Formula

C₁₂H₂₂O₄

Average Mass

230.3040 Da

Monoisotopic Mass

230.15181 Da

IUPAC Name

(3R)-3-hydroxy-11-oxododecanoic acid

Traditional Name

(3R)-3-hydroxy-11-oxododecanoic acid

CAS Registry Number

Not Available

SMILES

CC(=O)CCCCCCC[C@@H](O)CC(O)=O

InChI Identifier

InChI=1S/C12H22O4/c1-10(13)7-5-3-2-4-6-8-11(14)9-12(15)16/h11,14H,2-9H2,1H3,(H,15,16)/t11-/m1/s1

InChI Key

KGKIGWBYVVWXME-LLVKDONJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Blepharizonia plumosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain hydroxy acids and derivatives. These are hydroxy acids with a 6 to 12 carbon atoms long side chain.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Hydroxy acids and derivatives

Sub Class

Medium-chain hydroxy acids and derivatives

Direct Parent

Medium-chain hydroxy acids and derivatives

Alternative Parents

Substituents

Medium-chain hydroxy acid
Medium-chain fatty acid
Hydroxy fatty acid
Beta-hydroxy acid
Fatty acyl
Fatty acid
Secondary alcohol
Ketone
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.81	ChemAxon
pKa (Strongest Acidic)	4.67	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.6 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	60.81 m³·mol⁻¹	ChemAxon
Polarizability	26.33 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163193161

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3r)-3-hydroxy-11-oxododecanoic acid (NP0264362)

MOL for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

3D MOL for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

3D SDF for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

3D-SDF for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

PDB for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

3D PDB for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

SMILES for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

INCHI for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

Structure for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)

3D Structure for NP0264362 ((3r)-3-hydroxy-11-oxododecanoic acid)