NP-MRD: Showing NP-Card for 3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid (NP0262923)

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Record Information

Version

2.0

Created at

2022-09-08 05:56:31 UTC

Updated at

2022-09-08 05:56:31 UTC

NP-MRD ID

NP0262923

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid

Description

3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE, also known as N-(3-oxooctanoyl)-L-homoserine lactone or OOHL, belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. Thus, 3-oxo-octanoIC ACID (2-oxo-tetrahydro-furan-3-yl)-amide is considered to be a fatty amide lipid molecule. 3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid is found in Azospirillum lipoferum. 3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
    4.9334   -2.0128   -2.1534 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6815   -2.8582   -0.9419 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9750   -2.1012    0.1709 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6467   -1.6226   -0.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8849   -0.8579    0.6770 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5909   -0.3892    0.1238 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2936   -0.6313   -1.0318 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2933    0.3747    1.0501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5245    0.7812    0.3522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6750    0.4633   -0.8576 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5094    1.5233    1.0662 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7121    1.9096    0.3415 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8970    1.4428    1.1370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8262    2.6298    1.1286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9142    3.7212    1.1580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7910    3.3831    0.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9857    4.1955   -0.0862 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2811   -2.2991   -3.0180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7674   -0.9547   -1.8853 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9942   -2.1083   -2.4957 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1057   -3.7603   -1.2363 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6656   -3.2429   -0.5648 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5536   -1.2107    0.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8408   -2.7500    1.0438 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0001   -2.5040   -0.6495 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7870   -1.0199   -1.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7652   -1.4889    1.5766 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5229    0.0267    0.9498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5013   -0.2163    1.9676 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3191    1.2590    1.3944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3501    1.7620    2.0553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6984    1.5372   -0.7000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4254    0.6169    0.5937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6240    1.1308    2.1703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3713    2.6024    2.1180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5099    2.6690    0.2760 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 12 11  1  0
 11  9  1  0
  9 10  2  0
  9  8  1  0
  8  6  1  0
  6  7  2  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  1  0
 16 12  1  0
 12 32  1  6
 13 33  1  0
 13 34  1  0
 14 35  1  0
 14 36  1  0
 11 31  1  0
  8 29  1  0
  8 30  1  0
  5 27  1  0
  5 28  1  0
  4 25  1  0
  4 26  1  0
  3 23  1  0
  3 24  1  0
  2 21  1  0
  2 22  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
M  END

LAE
  Mrv0541 02241213512D          

 18 18  0  0  0  0            999 V2000
   -2.3769   -0.1635    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4632   -0.9840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2701   -1.1555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6826   -0.4410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1306    0.1721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8501   -1.5360    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6625    0.2490    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9480   -0.1635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2335    0.2490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4809   -0.1635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1954    0.2490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9099   -0.1635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6244    0.2490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3388   -0.1635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0533    0.2490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9480   -0.9885    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4809   -0.9885    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8872   -0.4815    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  5  1  0  0  0  0
  1  7  1  6  0  0  0
  1 18  1  1  0  0  0
  2  3  1  0  0  0  0
  2  6  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 16  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 17  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0262923

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]1(CCOC1=O)NC(=O)CC(=O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C12H19NO4/c1-2-3-4-5-9(14)8-11(15)13-10-6-7-17-12(10)16/h10H,2-8H2,1H3,(H,13,15)/t10-/m0/s1

> <INCHI_KEY>
FXCMGCFNLNFLSH-JTQLQIEISA-N

> <FORMULA>
C12H19NO4

> <MOLECULAR_WEIGHT>
241.2836

> <EXACT_MASS>
241.131408101

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
25.362672048514874

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-oxo-N-[(3S)-2-oxooxolan-3-yl]octanamide

> <ALOGPS_LOGP>
0.96

> <JCHEM_LOGP>
1.1737519959999998

> <ALOGPS_LOGS>
-1.75

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.352985817624752

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.31127980842936

> <JCHEM_PKA_STRONGEST_BASIC>
-3.910333054207714

> <JCHEM_POLAR_SURFACE_AREA>
72.47

> <JCHEM_REFRACTIVITY>
61.1831

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.28e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-oxo-N-[(3S)-2-oxooxolan-3-yl]octanamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: LAE                                               
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -4.437  -0.305   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.598  -1.837   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -6.104  -2.157   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -6.874  -0.823   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.844   0.321   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -3.454  -2.867   0.000  0.00  0.00           O+0
HETATM    7  N   UNK     0      -3.103   0.465   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      -1.770  -0.305   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.436   0.465   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.898  -0.305   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.231   0.465   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.565  -0.305   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.899   0.465   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.232  -0.305   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.566   0.465   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.770  -1.845   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       0.898  -1.845   0.000  0.00  0.00           O+0
HETATM   18  H   UNK     0      -3.523  -0.899   0.000  0.00  0.00           H+0
CONECT    1    2    5    7   18                                             
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    1    4                                                       
CONECT    6    2                                                            
CONECT    7    1    8                                                       
CONECT    8    7    9   16                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   17                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16    8                                                            
CONECT   17   10                                                            
CONECT   18    1                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

View in JSmol

Synonyms

Value	Source
N-(3-Oxooctanoyl)-L-homoserine lactone	Kegg
OOHL	Kegg
3-oxo-OCTANOate (2-oxo-tetrahydro-furan-3-yl)-amide	Generator
Conjugation factor 1, agrobacterium	MeSH
N-(beta-Oxooctan-1-oyl)homoserine lactone	MeSH
N-(3-oxo-Octanoyl)-L-homoserine lactone	MeSH
CF1, A. tumefaciens	MeSH
N-(beta-Ketooctanoyl)-L-HSL	MeSH
N-(beta-Oxooctan-1-oyl)-L-homoserine lactone	MeSH
AAI-oohl	MeSH

Chemical Formula

C₁₂H₁₉NO₄

Average Mass

241.2836 Da

Monoisotopic Mass

241.13141 Da

IUPAC Name

3-oxo-N-[(3S)-2-oxooxolan-3-yl]octanamide

Traditional Name

3-oxo-N-[(3S)-2-oxooxolan-3-yl]octanamide

CAS Registry Number

Not Available

SMILES

[H][C@@]1(CCOC1=O)NC(=O)CC(=O)CCCCC

InChI Identifier

InChI=1S/C12H19NO4/c1-2-3-4-5-9(14)8-11(15)13-10-6-7-17-12(10)16/h10H,2-8H2,1H3,(H,13,15)/t10-/m0/s1

InChI Key

FXCMGCFNLNFLSH-JTQLQIEISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Azospirillum lipoferum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids and derivatives

Alternative Parents

Substituents

Alpha-amino acid ester
N-acyl-alpha amino acid or derivatives
Acyl-homoserine lactone
Acyl-l-homoserine lactone
Fatty amide
Gamma butyrolactone
Fatty acyl
1,3-dicarbonyl compound
N-acyl-amine
Tetrahydrofuran
Carboxamide group
Carboxylic acid ester
Ketone
Secondary carboxylic acid amide
Lactone
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Carbonyl group
Organooxygen compound
Organic oxygen compound
Organonitrogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

fatty amide (CHEBI:43778 )
butan-4-olide (CHEBI:43778 )
Fatty acyl homoserine lactones (C11841 )
Fatty acyl homoserine lactones (LMFA08030004 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.96	ALOGPS
logP	1.17	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	10.31	ChemAxon
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	72.47 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	61.18 m³·mol⁻¹	ChemAxon
Polarizability	25.36 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

DB08081

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C11841

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

127293

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid (NP0262923)

MOL for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

3D MOL for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

3D SDF for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

3D-SDF for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

PDB for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

3D PDB for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

SMILES for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

INCHI for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

Structure for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)

3D Structure for NP0262923 (3-oxo-n-[(3s)-2-oxooxolan-3-yl]octanimidic acid)