NP-MRD: Showing NP-Card for 3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid (NP0262920)

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Record Information

Version

1.0

Created at

2022-09-08 05:56:17 UTC

Updated at

2022-09-08 05:56:17 UTC

NP-MRD ID

NP0262920

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid

Description

Nostophycin belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. It was first documented in 2011 (PMID: 21948844). Based on a literature review a small amount of articles have been published on Nostophycin (PMID: 23350234) (PMID: 22723716).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082207562D          

 64 68  0  0  1  0            999 V2000
    1.4557    0.1053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9017   -0.5888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7258   -0.5495    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1038    0.1838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1718   -1.2436    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9223   -0.9008    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7389   -0.7834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7389    0.0416    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5555   -0.9008    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7879   -0.1093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5896    0.0852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8221    0.8768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6238    1.0713    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1931    0.4742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9607   -0.3173    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1590   -0.5118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3059   -1.2436    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9294   -1.7838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5529   -1.2436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3754   -2.4779    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.0565   -2.0122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7098   -2.5160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4325   -3.2930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6079   -3.2694    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.6079   -4.0944    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4245   -4.2118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3754   -4.8860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9294   -5.5800    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3059   -6.1203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7519   -6.8143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5555   -6.4630    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7879   -7.2546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2186   -7.8517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4510   -8.6433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2528   -8.8378    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.8817   -9.2403    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7389   -6.5804    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9223   -6.4630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6898   -7.2546    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1718   -6.1203    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7258   -6.8143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5483   -5.5800    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9248   -6.1203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1452   -5.8505    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9891   -5.0404    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5217   -6.3907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2579   -6.1209    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8814   -6.6612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6610   -6.3913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2845   -6.9316    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0642   -6.6618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2203   -5.8517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8172   -5.5812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1023   -4.8860    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8699   -4.0944    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0533   -4.2118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8699   -3.2694    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0452   -3.2930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7680   -2.5160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4213   -2.0122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1023   -2.4779    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5483   -1.7838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9248   -1.2436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  4  0  0  0
  7  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  4  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 20 24  1  6  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
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 28 27  1  4  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
 31 37  1  0  0  0  0
 37 38  2  0  0  0  0
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 48 49  1  0  0  0  0
 49 50  2  0  0  0  0
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 49 54  1  0  0  0  0
 42 55  1  0  0  0  0
 55 56  2  0  0  0  0
 56 57  1  4  0  0  0
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 58 59  1  0  0  0  0
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 61 62  1  0  0  0  0
 58 62  1  6  0  0  0
 62 63  1  0  0  0  0
  5 63  1  0  0  0  0
 63 64  2  0  0  0  0
M  END

     RDKit          3D

128132  0  0  0  0  0  0  0  0999 V2000
   -0.7649    8.1202    1.3571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2417    7.3723    0.8315 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0096    7.1480    0.9952 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7254    7.9088    1.8969 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6773    6.0984    0.2361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6996    5.3415   -0.6707 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4578    4.2664   -1.4318 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2942    3.4658   -0.7396 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8815    2.6646   -0.0873 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2926    2.6370    0.1595 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1727    1.5230    0.5919 C   0  0  1  0  0  0  0  0  0  0  0  0
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    5.9309   -1.0719   -1.6123 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8477   -3.1822    1.5178 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -3.1214    2.9817   -2.5075 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.2791   -3.6742   -0.0832 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3122   -1.7347    1.0944 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309082207562D          

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M  END
> <DATABASE_ID>
NP0262920

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](C)[C@H]1N=C(O)[C@H](CC2=CC=CC=C2)N=C(O)[C@@H]2CCCN2C(=O)CN=C(O)[C@@H](CCC(O)=N)N=C(O)[C@@H](O)[C@@H](C[C@H](O)CCCC2=CC=CC=C2)N=C(O)[C@@H]2CCCN2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C46H64N8O10/c1-3-28(2)39-46(64)54-24-12-20-36(54)44(62)50-33(26-31(55)18-10-17-29-13-6-4-7-14-29)40(58)45(63)49-32(21-22-37(47)56)41(59)48-27-38(57)53-23-11-19-35(53)43(61)51-34(42(60)52-39)25-30-15-8-5-9-16-30/h4-9,13-16,28,31-36,39-40,55,58H,3,10-12,17-27H2,1-2H3,(H2,47,56)(H,48,59)(H,49,63)(H,50,62)(H,51,61)(H,52,60)/t28-,31-,32-,33-,34+,35+,36+,39-,40+/m1/s1

> <INCHI_KEY>
UQSINWJOXDSXPH-XHECVERBSA-N

> <FORMULA>
C46H64N8O10

> <MOLECULAR_WEIGHT>
889.064

> <EXACT_MASS>
888.474540293

> <JCHEM_ACCEPTOR_COUNT>
16

> <JCHEM_ATOM_COUNT>
128

> <JCHEM_AVERAGE_POLARIZABILITY>
93.99604900043988

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(3R,6S,9S,18R,21S,22R,25S)-6-benzyl-3-[(2R)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2R)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0^{9,13}]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid

> <JCHEM_LOGP>
0.9967324789038652

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
2.2682524096888264

> <JCHEM_PKA_STRONGEST_ACIDIC>
-0.6380571010925165

> <JCHEM_PKA_STRONGEST_BASIC>
12.491540825429562

> <JCHEM_POLAR_SURFACE_AREA>
288.1099999999999

> <JCHEM_REFRACTIVITY>
246.95080000000013

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
3-[(3R,6S,9S,18R,21S,22R,25S)-6-benzyl-3-[(2R)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2R)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0^{9,13}]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       2.717   0.196   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.550  -1.099   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.088  -1.026   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.794   0.343   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.921  -2.321   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       7.322  -1.682   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       8.846  -1.462   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       8.846   0.078   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      10.370  -1.682   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.804  -0.204   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.301   0.159   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.735   1.637   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.231   2.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      15.294   0.885   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      14.860  -0.592   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      13.363  -0.955   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0      11.771  -2.321   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0      12.935  -3.330   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      14.099  -2.321   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      13.767  -4.625   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.039  -3.756   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      16.258  -4.696   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      15.741  -6.147   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0      14.201  -6.103   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0      14.201  -7.643   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      15.726  -7.862   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      13.767  -9.121   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0      12.935 -10.416   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0      11.771 -11.425   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      12.604 -12.720   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      10.370 -12.064   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      10.804 -13.542   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.741 -14.656   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      10.175 -16.134   0.000  0.00  0.00           C+0
HETATM   35  N   UNK     0      11.672 -16.497   0.000  0.00  0.00           N+0
HETATM   36  O   UNK     0       9.112 -17.249   0.000  0.00  0.00           O+0
HETATM   37  N   UNK     0       8.846 -12.283   0.000  0.00  0.00           N+0
HETATM   38  C   UNK     0       7.322 -12.064   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0       6.888 -13.542   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0       5.921 -11.425   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0       5.088 -12.720   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0       4.757 -10.416   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       3.593 -11.425   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       2.138 -10.921   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0       1.846  -9.409   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0       0.974 -11.929   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      -0.481 -11.426   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -1.645 -12.434   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -3.101 -11.930   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -4.264 -12.939   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      -5.720 -12.435   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      -6.011 -10.923   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      -4.847  -9.915   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      -3.392 -10.418   0.000  0.00  0.00           C+0
HETATM   55  N   UNK     0       3.924  -9.121   0.000  0.00  0.00           N+0
HETATM   56  C   UNK     0       3.490  -7.643   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0       1.966  -7.862   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0       3.490  -6.103   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       1.951  -6.147   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0       1.434  -4.696   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0       2.653  -3.756   0.000  0.00  0.00           C+0
HETATM   62  N   UNK     0       3.924  -4.625   0.000  0.00  0.00           N+0
HETATM   63  C   UNK     0       4.757  -3.330   0.000  0.00  0.00           C+0
HETATM   64  O   UNK     0       3.593  -2.321   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   63                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   17                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11                                                       
CONECT   17    9   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   24                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   20   25                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   37                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
CONECT   37   31   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43   55                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45   46                                                  
CONECT   45   44                                                            
CONECT   46   44   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   54                                                  
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   49                                                       
CONECT   55   42   56                                                       
CONECT   56   55   57   58                                                  
CONECT   57   56                                                            
CONECT   58   56   59   62                                                  
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   58   63                                                  
CONECT   63   62    5   64                                                  
CONECT   64   63                                                            
MASTER        0    0    0    0    0    0    0    0   64    0  136    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₆H₆₄N₈O₁₀

Average Mass

889.0640 Da

Monoisotopic Mass

888.47454 Da

IUPAC Name

3-[(3R,6S,9S,18R,21S,22R,25S)-6-benzyl-3-[(2R)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2R)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0^{9,13}]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid

Traditional Name

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)[C@H]1N=C(O)[C@H](CC2=CC=CC=C2)N=C(O)[C@@H]2CCCN2C(=O)CN=C(O)[C@@H](CCC(O)=N)N=C(O)[C@@H](O)[C@@H](C[C@H](O)CCCC2=CC=CC=C2)N=C(O)[C@@H]2CCCN2C1=O

InChI Identifier

InChI=1S/C46H64N8O10/c1-3-28(2)39-46(64)54-24-12-20-36(54)44(62)50-33(26-31(55)18-10-17-29-13-6-4-7-14-29)40(58)45(63)49-32(21-22-37(47)56)41(59)48-27-38(57)53-23-11-19-35(53)43(61)51-34(42(60)52-39)25-30-15-8-5-9-16-30/h4-9,13-16,28,31-36,39-40,55,58H,3,10-12,17-27H2,1-2H3,(H2,47,56)(H,48,59)(H,49,63)(H,50,62)(H,51,61)(H,52,60)/t28-,31-,32-,33-,34+,35+,36+,39-,40+/m1/s1

InChI Key

UQSINWJOXDSXPH-XHECVERBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Hybrid peptides

Direct Parent

Hybrid peptides

Alternative Parents

Substituents

Cyclic hybrid peptide
Alpha-oligopeptide
Macrolactam
Beta amino acid or derivatives
Alpha-amino acid or derivatives
Monocyclic benzene moiety
Fatty amide
Fatty acyl
Benzenoid
Pyrrolidine
Tertiary carboxylic acid amide
Carboxamide group
Lactam
Primary carboxylic acid amide
Secondary alcohol
Secondary carboxylic acid amide
Azacycle
Carboxylic acid derivative
Organoheterocyclic compound
Organonitrogen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organooxygen compound
Organic oxygen compound
Organopnictogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1	ChemAxon
pKa (Strongest Acidic)	-0.64	ChemAxon
pKa (Strongest Basic)	12.49	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	16	ChemAxon
Hydrogen Donor Count	9	ChemAxon
Polar Surface Area	288.11 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	246.95 m³·mol⁻¹	ChemAxon
Polarizability	94 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00032081

Chemspider ID

8899707

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10724374

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Fewer DP, Osterholm J, Rouhiainen L, Jokela J, Wahlsten M, Sivonen K: Nostophycin biosynthesis is directed by a hybrid polyketide synthase-nonribosomal peptide synthetase in the toxic cyanobacterium Nostoc sp. strain 152. Appl Environ Microbiol. 2011 Nov;77(22):8034-40. doi: 10.1128/AEM.05993-11. Epub 2011 Sep 23. [PubMed:21948844 ]
Kaliuzhnaia OV, Kulakova NV, Itskovich BV: [Diversity of polyketide synthase genes (PKS) in metagenomic community of the freshwater sponge]. Mol Biol (Mosk). 2012 Nov-Dec;46(6):887-93. [PubMed:23350234 ]
Kurmayer R: THE TOXIC CYANOBACTERIUM NOSTOC SP. STRAIN 152 PRODUCES HIGHEST AMOUNTS OF MICROCYSTIN AND NOSTOPHYCIN UNDER STRESS CONDITIONS. J Phycol. 2011 Feb;47(1):200-207. doi: 10.1111/j.1529-8817.2010.00931.x. [PubMed:22723716 ]
LOTUS database [Link]

Showing NP-Card for 3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid (NP0262920)

MOL for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

3D MOL for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

3D SDF for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

3D-SDF for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

PDB for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

3D PDB for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

SMILES for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

INCHI for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

Structure for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)

3D Structure for NP0262920 (3-[(3r,6s,9s,18r,21s,22r,25s)-6-benzyl-3-[(2r)-butan-2-yl]-5,8,17,20,21,24-hexahydroxy-22-[(2r)-2-hydroxy-5-phenylpentyl]-2,14-dioxo-1,4,7,13,16,19,23-heptaazatricyclo[23.3.0.0⁹,¹³]octacosa-4,7,16,19,23-pentaen-18-yl]propanimidic acid)