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Record Information
Version2.0
Created at2022-09-08 05:47:17 UTC
Updated at2022-09-08 05:47:17 UTC
NP-MRD IDNP0262803
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1r,2r,4s,7s,8s,11r,12r,13s,18r)-7-(furan-3-yl)-13-hydroxy-1,8,12,17,17-pentamethyl-3,6,16-trioxapentacyclo[9.9.0.0²,⁴.0²,⁸.0¹²,¹⁸]icosane-5,15,20-trione
DescriptionDeacetylnomilin belongs to the class of organic compounds known as limonoids. These are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17. (1r,2r,4s,7s,8s,11r,12r,13s,18r)-7-(furan-3-yl)-13-hydroxy-1,8,12,17,17-pentamethyl-3,6,16-trioxapentacyclo[9.9.0.0²,⁴.0²,⁸.0¹²,¹⁸]icosane-5,15,20-trione is found in Casimiroa edulis, Citrus aurantium, Citrus hanaju, Citrus cavaleriei, Citrus iyo, Citrus junos, Citrus macrophylla, Citrus reticulata, Citrus sphaerocarpa, Citrus sudachi, Citrus trifoliata and Skimmia japonica. (1r,2r,4s,7s,8s,11r,12r,13s,18r)-7-(furan-3-yl)-13-hydroxy-1,8,12,17,17-pentamethyl-3,6,16-trioxapentacyclo[9.9.0.0²,⁴.0²,⁸.0¹²,¹⁸]icosane-5,15,20-trione was first documented in 2003 (PMID: 14710824). Based on a literature review a significant number of articles have been published on Deacetylnomilin (PMID: 19782062) (PMID: 34651409) (PMID: 34335665) (PMID: 34116362) (PMID: 21950163) (PMID: 17542482).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC26H32O8
Average Mass472.5340 Da
Monoisotopic Mass472.20972 Da
IUPAC Name(1R,2R,4S,7R,8S,11R,12R,13S,18R)-7-(furan-3-yl)-13-hydroxy-1,8,12,17,17-pentamethyl-3,6,16-trioxapentacyclo[9.9.0.0^{2,4}.0^{2,8}.0^{12,18}]icosane-5,15,20-trione
Traditional Name(1R,2R,4S,7R,8S,11R,12R,13S,18R)-7-(furan-3-yl)-13-hydroxy-1,8,12,17,17-pentamethyl-3,6,16-trioxapentacyclo[9.9.0.0^{2,4}.0^{2,8}.0^{12,18}]icosane-5,15,20-trione
CAS Registry NumberNot Available
SMILES
C[C@@]12CC[C@@H]3[C@]4(C)[C@@H](CC(=O)[C@@]3(C)[C@]11O[C@@H]1C(=O)O[C@H]2C1=COC=C1)C(C)(C)OC(=O)C[C@@H]4O
InChI Identifier
InChI=1S/C26H32O8/c1-22(2)15-10-17(28)25(5)14(24(15,4)16(27)11-18(29)33-22)6-8-23(3)19(13-7-9-31-12-13)32-21(30)20-26(23,25)34-20/h7,9,12,14-16,19-20,27H,6,8,10-11H2,1-5H3/t14-,15+,16+,19+,20-,23+,24-,25+,26-/m1/s1
InChI KeyHWAJASVMTDEFJN-NEFLTLJKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Casimiroa edulisLOTUS Database
Citrus aurantiumLOTUS Database
Citrus hanajuLOTUS Database
Citrus ichangensisLOTUS Database
Citrus iyoLOTUS Database
Citrus junosLOTUS Database
Citrus macrophyllaLOTUS Database
Citrus reticulataLOTUS Database
Citrus sphaerocarpaLOTUS Database
Citrus sudachiLOTUS Database
Citrus trifoliataLOTUS Database
Skimmia japonicaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as limonoids. These are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentLimonoids
Alternative Parents
Substituents
  • Limonoid skeleton
  • Naphthopyran
  • Naphthalene
  • Caprolactone
  • 1,4-dioxepane
  • Delta valerolactone
  • Dioxepane
  • Delta_valerolactone
  • Oxepane
  • Oxane
  • Pyran
  • Dicarboxylic acid or derivatives
  • Heteroaromatic compound
  • Furan
  • Secondary alcohol
  • Carboxylic acid ester
  • Lactone
  • Ketone
  • Oxacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Dialkyl ether
  • Oxirane
  • Ether
  • Organic oxide
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Carbonyl group
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.58ChemAxon
pKa (Strongest Acidic)14.42ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area115.57 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity116.45 m³·mol⁻¹ChemAxon
Polarizability48.23 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00054394
Chemspider ID103883023
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139082180
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. El-Readi MZ, Hamdan D, Farrag N, El-Shazly A, Wink M: Inhibition of P-glycoprotein activity by limonin and other secondary metabolites from Citrus species in human colon and leukaemia cell lines. Eur J Pharmacol. 2010 Jan 25;626(2-3):139-45. doi: 10.1016/j.ejphar.2009.09.040. Epub 2009 Sep 24. [PubMed:19782062 ]
  2. Tian Q, Schwartz SJ: Mass spectrometry and tandem mass spectrometry of citrus limonoids. Anal Chem. 2003 Oct 15;75(20):5451-60. doi: 10.1021/ac030115w. [PubMed:14710824 ]
  3. Ling W, Dai T, Zhang J, Liang Y, Yin W, Zhong B, Zhang J: Evaluation of Pomelo Seed Extracts as Natural Antioxidant, Antibacterial, Herbicidal Agents, and Their Functional Components. Chem Biodivers. 2021 Dec;18(12):e2100679. doi: 10.1002/cbdv.202100679. Epub 2021 Oct 27. [PubMed:34651409 ]
  4. Yan H, Pu ZJ, Zhang ZY, Zhou GS, Zou DQ, Guo S, Li C, Zhan ZL, Duan JA: Research on Biomarkers of Different Growth Periods and Different Drying Processes of Citrus wilsonii Tanaka Based on Plant Metabolomics. Front Plant Sci. 2021 Jul 14;12:700367. doi: 10.3389/fpls.2021.700367. eCollection 2021. [PubMed:34335665 ]
  5. Giofre SV, Napoli E, Iraci N, Speciale A, Cimino F, Muscara C, Molonia MS, Ruberto G, Saija A: Interaction of selected terpenoids with two SARS-CoV-2 key therapeutic targets: An in silico study through molecular docking and dynamics simulations. Comput Biol Med. 2021 Jul;134:104538. doi: 10.1016/j.compbiomed.2021.104538. Epub 2021 Jun 8. [PubMed:34116362 ]
  6. Hamdan D, El-Readi MZ, Tahrani A, Herrmann F, Kaufmann D, Farrag N, El-Shazly A, Wink M: Secondary metabolites of ponderosa lemon (Citrus pyriformis) and their antioxidant, anti-inflammatory, and cytotoxic activities. Z Naturforsch C J Biosci. 2011 Jul-Aug;66(7-8):385-93. doi: 10.1515/znc-2011-7-810. [PubMed:21950163 ]
  7. Mandadi KK, Jayaprakasha GK, Bhat NG, Patil BS: Red Mexican grapefruit: a novel source for bioactive limonoids and their antioxidant activity. Z Naturforsch C J Biosci. 2007 Mar-Apr;62(3-4):179-88. doi: 10.1515/znc-2007-3-405. [PubMed:17542482 ]
  8. Poulose SM, Harris ED, Patil BS: Antiproliferative effects of citrus limonoids against human neuroblastoma and colonic adenocarcinoma cells. Nutr Cancer. 2006;56(1):103-12. doi: 10.1207/s15327914nc5601_14. [PubMed:17176224 ]
  9. Tian Q, Li D, Barbacci D, Schwartz SJ, Patil BS: Electron ionization mass spectrometry of citrus limonoids. Rapid Commun Mass Spectrom. 2003;17(22):2517-22. doi: 10.1002/rcm.1218. [PubMed:14608622 ]
  10. Khalil AT, Maatooq GT, El Sayed KA: Limonoids from Citrus reticulata. Z Naturforsch C J Biosci. 2003 Mar-Apr;58(3-4):165-70. doi: 10.1515/znc-2003-3-403. [PubMed:12710721 ]
  11. LOTUS database [Link]