NP-MRD: Showing NP-Card for methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate (NP0261739)

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Record Information

Version

2.0

Created at

2022-09-08 04:16:01 UTC

Updated at

2022-09-08 04:16:01 UTC

NP-MRD ID

NP0261739

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate

Description

Methyl 2-[(1R,2R,3R,7R,8S,11S,12R,13S,15S,17R)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]Octadecan-13-yl]acetate belongs to the class of organic compounds known as limonoids. These are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17. methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate is found in Xylocarpus rumphii. Based on a literature review very few articles have been published on methyl 2-[(1R,2R,3R,7R,8S,11S,12R,13S,15S,17R)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]Octadecan-13-yl]acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082206162D          

 36 41  0  0  1  0            999 V2000
    1.4544   -2.3158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3319   -1.4999    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5641   -1.1981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0812   -1.7120    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4417   -0.3822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0870    0.1318    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9195    1.0207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1481    0.7283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4965    1.7290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5815    1.5949    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3045    2.1046    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8588    1.4033    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3075    0.6442    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9011   -0.0738    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3197   -0.7847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1447   -0.7777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5511   -0.0597    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9696   -0.7707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3760   -0.0527    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7946   -0.7636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6158   -0.8429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7942   -1.6484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0833   -2.0669    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4655   -1.5202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7824    0.6652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3639    1.3762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7703    2.0941    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5389    1.3691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1325    0.6512    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7139    1.3621    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9352   -0.2387    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8353   -1.0576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647    0.3154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8818    0.4288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1648    1.1252    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4002    0.8154    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  6  0  0  0
 12 11  1  6  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 20 24  2  0  0  0  0
 19 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 13 29  1  0  0  0  0
 17 29  1  0  0  0  0
 29 30  1  1  0  0  0
 14 31  1  0  0  0  0
  6 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 10 35  1  0  0  0  0
 12 35  1  0  0  0  0
 35 36  1  1  0  0  0
M  END

     RDKit          3D

 70 75  0  0  0  0  0  0  0  0999 V2000
   -4.7263    4.1647   -1.1406 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6774    2.8647   -0.5906 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4438    2.1721   -0.5427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4780    2.7789   -1.0006 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4624    0.8556    0.0294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2546    0.0041    0.0839 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7880   -1.2671    0.8039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2896   -0.8205    2.1869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9050   -1.9261    0.0907 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6745   -2.2389    1.0736 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5383   -1.5777    1.4554 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1852   -2.0172    0.3954 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8411   -1.0330   -0.5004 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0628   -0.0931   -1.2315 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3459    1.3349   -1.1216 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8107    1.5087   -1.4282 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7219    0.5310   -0.7189 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3559   -0.3225   -1.8108 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8152    1.3467   -0.0643 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8271    0.6006    0.6808 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4719   -0.5727    0.4030 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3800   -0.8104    1.4380 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2819    0.1755    2.2927 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3924    1.0233    1.8985 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0987    2.1661    0.8823 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3390    1.5275    1.8083 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1911    2.0406    2.9567 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6452    0.2173    1.5484 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9960   -0.3572    0.2322 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8850   -1.4309    0.5144 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5337   -0.3709   -1.1352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2250    0.1193   -2.4174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5887   -1.8914   -1.3060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0592   -2.4437   -2.2508 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0137   -2.6803   -0.2171 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9613   -4.0378   -0.3768 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7253    4.4493   -1.5643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9481    4.8945   -0.3316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5215    4.2265   -1.8997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3845    0.2966   -0.3021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7311    1.0368    1.1375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5750    0.4508    0.8557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1501   -1.6727    2.9069 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3655   -0.6010    2.1725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6387   -0.0055    2.5079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8508   -1.9275    0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1923   -1.5596   -0.8842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6811   -3.0246   -0.0294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0122   -3.0662    1.7218 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9222   -2.7927    0.7098 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3701   -1.6830   -1.2597 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1272   -0.2862   -2.3526 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1148    1.8387   -0.1970 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1814    1.9049   -1.9508 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0645    2.5481   -1.1402 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9361    1.4764   -2.5380 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3436   -1.3941   -1.5412 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7366   -0.1995   -2.7509 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3436    0.0778   -2.0817 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2578    2.0344   -0.8228 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3907   -1.2510   -0.4178 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0538   -1.6386    1.5498 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1047    1.9291    2.4063 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6000    0.4166    1.7642 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9889   -0.4313    2.4093 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6265   -1.8605    1.3658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2329   -0.6656   -3.2103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6558    0.9558   -2.8584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2482    0.4390   -2.2570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7883   -4.4559    0.4979 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  7 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  6
 17 19  1  0
 19 25  1  0
 25 26  1  0
 26 27  2  0
 26 28  1  0
 28 29  1  0
 29 30  1  1
 19 20  1  0
 20 24  2  0
 24 23  1  0
 23 22  1  0
 22 21  2  0
 14 31  1  0
 31 32  1  6
 31 33  1  0
 33 34  2  0
 33 35  1  0
 35 36  1  6
 31  6  1  0
 35 10  1  0
 35 12  1  0
 29 13  1  0
 21 20  1  0
 29 17  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  1
  8 43  1  0
  8 44  1  0
  8 45  1  0
  9 46  1  0
  9 47  1  0
  9 48  1  0
 10 49  1  1
 12 50  1  1
 13 51  1  6
 14 52  1  6
 15 53  1  0
 15 54  1  0
 16 55  1  0
 16 56  1  0
 18 57  1  0
 18 58  1  0
 18 59  1  0
 19 60  1  6
 28 64  1  0
 28 65  1  0
 30 66  1  0
 24 63  1  0
 22 62  1  0
 21 61  1  0
 32 67  1  0
 32 68  1  0
 32 69  1  0
 36 70  1  0
M  END


  Mrv1652309082206162D          

 36 41  0  0  1  0            999 V2000
    1.4544   -2.3158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3319   -1.4999    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5641   -1.1981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0812   -1.7120    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4417   -0.3822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0870    0.1318    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9195    1.0207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1481    0.7283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4965    1.7290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5815    1.5949    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3045    2.1046    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8588    1.4033    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3075    0.6442    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9011   -0.0738    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3197   -0.7847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1447   -0.7777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5511   -0.0597    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9696   -0.7707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3760   -0.0527    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7946   -0.7636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6158   -0.8429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7942   -1.6484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0833   -2.0669    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4655   -1.5202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7824    0.6652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3639    1.3762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7703    2.0941    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5389    1.3691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1325    0.6512    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7139    1.3621    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9352   -0.2387    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8353   -1.0576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647    0.3154    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8818    0.4288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1648    1.1252    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4002    0.8154    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  6  0  0  0
 12 11  1  6  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 20 24  2  0  0  0  0
 19 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 13 29  1  0  0  0  0
 17 29  1  0  0  0  0
 29 30  1  1  0  0  0
 14 31  1  0  0  0  0
  6 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 10 35  1  0  0  0  0
 12 35  1  0  0  0  0
 35 36  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0261739

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C[C@H]1C(C)(C)[C@@H]2O[C@@H]3[C@H]4[C@H](CC[C@@]5(C)[C@@H](OC(=O)C[C@@]45O)C4=COC=C4)[C@@]1(C)C(=O)[C@]23O

> <INCHI_IDENTIFIER>
InChI=1S/C27H34O9/c1-23(2)15(10-16(28)33-5)25(4)14-6-8-24(3)19(13-7-9-34-12-13)35-17(29)11-26(24,31)18(14)20-27(32,21(25)30)22(23)36-20/h7,9,12,14-15,18-20,22,31-32H,6,8,10-11H2,1-5H3/t14-,15-,18+,19-,20+,22-,24-,25+,26+,27-/m0/s1

> <INCHI_KEY>
QYFLIEOOSQQACI-DELMHYLQSA-N

> <FORMULA>
C27H34O9

> <MOLECULAR_WEIGHT>
502.56

> <EXACT_MASS>
502.220282675

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
51.160584499545976

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl 2-[(1R,2R,3R,7R,8S,11S,12R,13S,15S,17R)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0^{2,11}.0^{3,8}.0^{15,17}]octadecan-13-yl]acetate

> <JCHEM_LOGP>
1.9419670499999988

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.732355903625166

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.340542904949887

> <JCHEM_PKA_STRONGEST_BASIC>
-2.869051688599944

> <JCHEM_POLAR_SURFACE_AREA>
132.5

> <JCHEM_REFRACTIVITY>
122.52959999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
methyl [(1R,2R,3R,7R,8S,11S,12R,13S,15S,17R)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0^{2,11}.0^{3,8}.0^{15,17}]octadecan-13-yl]acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       2.715  -4.323   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.486  -2.800   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.053  -2.236   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -0.152  -3.196   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       0.824  -0.713   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.029   0.246   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.716   1.905   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.276   1.359   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.927   3.227   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.952   2.977   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       4.302   3.929   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.336   2.620   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.174   1.202   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.415  -0.138   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.197  -1.465   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.737  -1.452   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.495  -0.112   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.277  -1.439   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.035  -0.098   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.817  -1.425   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      12.349  -1.573   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      12.682  -3.077   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      11.355  -3.858   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      10.202  -2.838   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      10.794   1.242   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      10.013   2.569   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      10.771   3.909   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       8.473   2.556   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.714   1.216   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       6.933   2.543   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       3.612  -0.446   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.426  -1.974   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       3.854   0.589   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       5.379   0.800   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       4.041   2.100   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       2.614   1.522   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   31                                                  
CONECT    7    6    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11   35                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   35                                                  
CONECT   13   12   14   29                                                  
CONECT   14   13   15   31                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   29                                             
CONECT   18   17                                                            
CONECT   19   17   20   25                                                  
CONECT   20   19   21   24                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   20                                                       
CONECT   25   19   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   13   17   30                                             
CONECT   30   29                                                            
CONECT   31   14    6   32   33                                             
CONECT   32   31                                                            
CONECT   33   31   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   10   12   36                                             
CONECT   36   35                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   82    0
END

View in JSmol

Synonyms

Value	Source
Methyl 2-[(1R,2R,3R,7R,8S,11S,12R,13S,15S,17R)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0,.0,.0,]octadecan-13-yl]acetic acid	Generator

Chemical Formula

C₂₇H₃₄O₉

Average Mass

502.5600 Da

Monoisotopic Mass

502.22028 Da

IUPAC Name

methyl 2-[(1R,2R,3R,7R,8S,11S,12R,13S,15S,17R)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0^{2,11}.0^{3,8}.0^{15,17}]octadecan-13-yl]acetate

Traditional Name

methyl [(1R,2R,3R,7R,8S,11S,12R,13S,15S,17R)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0^{2,11}.0^{3,8}.0^{15,17}]octadecan-13-yl]acetate

CAS Registry Number

Not Available

SMILES

COC(=O)C[C@H]1C(C)(C)[C@@H]2O[C@@H]3[C@H]4[C@H](CC[C@@]5(C)[C@@H](OC(=O)C[C@@]45O)C4=COC=C4)[C@@]1(C)C(=O)[C@]23O

InChI Identifier

InChI=1S/C27H34O9/c1-23(2)15(10-16(28)33-5)25(4)14-6-8-24(3)19(13-7-9-34-12-13)35-17(29)11-26(24,31)18(14)20-27(32,21(25)30)22(23)36-20/h7,9,12,14-15,18-20,22,31-32H,6,8,10-11H2,1-5H3/t14-,15-,18+,19-,20+,22-,24-,25+,26+,27-/m0/s1

InChI Key

QYFLIEOOSQQACI-DELMHYLQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Xylocarpus rumphii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as limonoids. These are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Limonoids

Alternative Parents

Substituents

Limonoid skeleton
Mexicanolide
Naphthopyran
Naphthalene
Delta valerolactone
Delta_valerolactone
Dicarboxylic acid or derivatives
Oxane
Pyran
Cyclic alcohol
Furan
Heteroaromatic compound
Methyl ester
Tertiary alcohol
Lactone
Ketone
Carboxylic acid ester
Oxetane
Oxacycle
Ether
Dialkyl ether
Organoheterocyclic compound
Carboxylic acid derivative
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.94	ChemAxon
pKa (Strongest Acidic)	11.34	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	132.5 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	122.53 m³·mol⁻¹	ChemAxon
Polarizability	51.16 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162892208

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate (NP0261739)

MOL for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

3D MOL for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

3D SDF for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

3D-SDF for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

PDB for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

3D PDB for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

SMILES for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

INCHI for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

Structure for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)

3D Structure for NP0261739 (methyl 2-[(1r,2r,3r,7s,8s,11s,12r,13s,15s,17r)-7-(furan-3-yl)-3,17-dihydroxy-8,12,14,14-tetramethyl-5,18-dioxo-6,16-dioxapentacyclo[10.4.2.0²,¹¹.0³,⁸.0¹⁵,¹⁷]octadecan-13-yl]acetate)