NP-MRD: Showing NP-Card for (2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid (NP0261653)

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Record Information

Version

2.0

Created at

2022-09-08 04:09:49 UTC

Updated at

2022-09-08 04:09:49 UTC

NP-MRD ID

NP0261653

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid

Description

Sylvamide belongs to the class of organic compounds known as n-acyl amines. N-acyl amines are compounds containing a fatty acid moiety linked to an amine group through an ester linkage. (2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid is found in Piper sylvaticum. (2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid was first documented in 2009 (PMID: 19809914). Based on a literature review very few articles have been published on Sylvamide (PMID: 26802607).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 45 44  0  0  0  0  0  0  0  0999 V2000
    5.5992   -0.5777    0.1186 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0326   -0.4282    1.4700 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6815    0.1483    1.6483 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5470   -0.5352    0.9924 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4724   -0.5547   -0.4776 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2783    0.7844   -1.1253 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2461    1.7210   -0.8711 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8747    1.3272   -0.8960 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7452    2.4179   -1.7861 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1021    0.3077   -1.3667 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2737    0.1304   -0.8008 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2237   -0.8689   -1.2670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9581   -1.7047   -2.3425 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3628   -1.0158   -0.6894 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6835   -0.1677    0.4348 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1288   -0.3684    0.8798 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4186    0.5284    2.0454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9904   -0.0044   -0.3224 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4595   -1.6359   -0.2690 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3140    0.1510   -0.6439 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7421   -0.5109    0.1457 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1224   -1.3941    2.0635 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7526    0.2459    2.0454 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7134    1.2483    1.4557 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4724    0.1014    2.7643 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6062   -1.6220    1.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5743   -0.1928    1.4085 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2790   -1.0653   -0.9995 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5374   -1.1400   -0.7404 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2988    0.5729   -2.2377 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8587    1.7752   -1.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7029    1.6626    0.1256 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0859    2.0602   -2.6609 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1751   -0.3079   -2.2116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5119    0.7658    0.0404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7673   -1.2817   -3.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5469    0.8935    0.0818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0098   -0.3526    1.2777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2784   -1.4360    1.0892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0333    0.0571    2.9754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5046    0.7463    2.1756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9258    1.5055    1.8537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0670   -0.0173   -0.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7308   -0.7159   -1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6538    1.0209   -0.6293 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 16 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  0
  3 25  1  0
  4 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
  6 30  1  6
  7 31  1  0
  8 32  1  1
  9 33  1  0
 10 34  1  0
 11 35  1  0
 13 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 17 40  1  0
 17 41  1  0
 17 42  1  0
 18 43  1  0
 18 44  1  0
 18 45  1  0
M  END


  Mrv1652309082206092D          

 18 17  0  0  0  0            999 V2000
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    2.6664    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    2.6664    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1908    1.4289    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.9052    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6197    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3342    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6197    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  4  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0261653

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(O)C(O)\C=C\C(O)=NCC(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C14H27NO3/c1-4-5-6-7-12(16)13(17)8-9-14(18)15-10-11(2)3/h8-9,11-13,16-17H,4-7,10H2,1-3H3,(H,15,18)/b9-8+

> <INCHI_KEY>
GKAGMQMUZOEEEM-CMDGGOBGSA-N

> <FORMULA>
C14H27NO3

> <MOLECULAR_WEIGHT>
257.374

> <EXACT_MASS>
257.199093733

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
30.899948417694578

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E)-4,5-dihydroxy-N-(2-methylpropyl)dec-2-enimidic acid

> <JCHEM_LOGP>
2.1397229414403265

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.670562143245288

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.094271181696964

> <JCHEM_PKA_STRONGEST_BASIC>
7.082565136103873

> <JCHEM_POLAR_SURFACE_AREA>
73.05

> <JCHEM_REFRACTIVITY>
74.43270000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-4,5-dihydroxy-N-(2-methylpropyl)dec-2-enimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       1.953   2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       8.621   4.977   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       9.955   1.127   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      11.288   3.437   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.622   2.667   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.956   3.437   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      13.956   4.977   0.000  0.00  0.00           O+0
HETATM   14  N   UNK     0      15.289   2.667   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0      16.623   3.437   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      17.957   2.667   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      19.290   3.437   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      17.957   1.127   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₄H₂₇NO₃

Average Mass

257.3740 Da

Monoisotopic Mass

257.19909 Da

IUPAC Name

(2E)-4,5-dihydroxy-N-(2-methylpropyl)dec-2-enimidic acid

Traditional Name

(2E)-4,5-dihydroxy-N-(2-methylpropyl)dec-2-enimidic acid

CAS Registry Number

Not Available

SMILES

CCCCCC(O)C(O)\C=C\C(O)=NCC(C)C

InChI Identifier

InChI=1S/C14H27NO3/c1-4-5-6-7-12(16)13(17)8-9-14(18)15-10-11(2)3/h8-9,11-13,16-17H,4-7,10H2,1-3H3,(H,15,18)/b9-8+

InChI Key

GKAGMQMUZOEEEM-CMDGGOBGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Piper sylvaticum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl amines. N-acyl amines are compounds containing a fatty acid moiety linked to an amine group through an ester linkage.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty amides

Direct Parent

N-acyl amines

Alternative Parents

Substituents

N-acyl-amine
Secondary carboxylic acid amide
Secondary alcohol
Carboxamide group
1,2-diol
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.14	ChemAxon
pKa (Strongest Acidic)	5.09	ChemAxon
pKa (Strongest Basic)	7.08	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	73.05 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	74.43 m³·mol⁻¹	ChemAxon
Polarizability	30.9 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10192708

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21580215

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wangensteen H, Ho GT, Tadesse M, Miles CO, Moussavi N, Mikolo B, Malterud KE: A new benzophenanthridine alkaloid and other bioactive constituents from the stem bark of Zanthoxylum heitzii. Fitoterapia. 2016 Mar;109:196-200. doi: 10.1016/j.fitote.2016.01.012. Epub 2016 Jan 21. [PubMed:26802607 ]
Ee GC, Lim CM, Lim CK, Rahmani M, Shaari K, Bong CF: Alkaloids from Piper sarmentosum and Piper nigrum. Nat Prod Res. 2009;23(15):1416-23. doi: 10.1080/14786410902757998. [PubMed:19809914 ]
LOTUS database [Link]

Showing NP-Card for (2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid (NP0261653)

MOL for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

3D MOL for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

3D SDF for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

3D-SDF for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

PDB for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

3D PDB for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

SMILES for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

INCHI for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

Structure for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)

3D Structure for NP0261653 ((2e)-4,5-dihydroxy-n-(2-methylpropyl)dec-2-enimidic acid)