NP-MRD: Showing NP-Card for (2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one (NP0261468)

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Record Information

Version

2.0

Created at

2022-09-08 03:55:21 UTC

Updated at

2022-09-08 03:55:21 UTC

NP-MRD ID

NP0261468

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one

Description

(2S,3aS)-3a-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2R)-2-methylbutanoyl]-2,3,3a,4-tetrahydro-1-benzofuran-4-one belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other. Based on a literature review very few articles have been published on (2S,3aS)-3a-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2R)-2-methylbutanoyl]-2,3,3a,4-tetrahydro-1-benzofuran-4-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082205552D          

 32 33  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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  Mrv1652309082205552D          

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M  END
> <DATABASE_ID>
NP0261468

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](C)C(=O)C1=C(O)C(C)=C2O[C@@H](C[C@]2(C\C=C(/C)CCC=C(C)C)C1=O)C(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C27H40O5/c1-9-18(5)22(28)21-23(29)19(6)25-27(24(21)30,15-20(32-25)26(7,8)31)14-13-17(4)12-10-11-16(2)3/h11,13,18,20,29,31H,9-10,12,14-15H2,1-8H3/b17-13+/t18-,20+,27-/m1/s1

> <INCHI_KEY>
PYZGOGXMYGHHEK-NMWAPBGFSA-N

> <FORMULA>
C27H40O5

> <MOLECULAR_WEIGHT>
444.612

> <EXACT_MASS>
444.287574388

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
50.23165726243427

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3aS)-3a-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2R)-2-methylbutanoyl]-2,3,3a,4-tetrahydro-1-benzofuran-4-one

> <JCHEM_LOGP>
5.310694695333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.307281245287125

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.428565155275382

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1020939638160128

> <JCHEM_POLAR_SURFACE_AREA>
83.83000000000001

> <JCHEM_REFRACTIVITY>
132.0705

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3aS)-3a-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2R)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      11.592   3.613   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.259   4.383   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.925   3.613   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.925   2.073   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       7.591   5.923   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       7.591   1.303   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.924  -0.237   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.126   1.597   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.320   2.843   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.860   2.843   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.320   4.383   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.320   1.303   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.126   4.089   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.429   5.144   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.022   5.771   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.861   7.302   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.107   8.208   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.455   7.929   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.294   9.460   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.113  10.087   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -1.274  11.618   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -2.681  12.245   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.028  12.523   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       4.924   5.923   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   31                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   20                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16   17   18                                             
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   15                                                            
CONECT   19   14   20                                                       
CONECT   20   19   12   21   31                                             
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   20    7   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀O₅

Average Mass

444.6120 Da

Monoisotopic Mass

444.28757 Da

IUPAC Name

(2S,3aS)-3a-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2R)-2-methylbutanoyl]-2,3,3a,4-tetrahydro-1-benzofuran-4-one

Traditional Name

(2S,3aS)-3a-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2R)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)C(=O)C1=C(O)C(C)=C2O[C@@H](C[C@]2(C\C=C(/C)CCC=C(C)C)C1=O)C(C)(C)O

InChI Identifier

InChI=1S/C27H40O5/c1-9-18(5)22(28)21-23(29)19(6)25-27(24(21)30,15-20(32-25)26(7,8)31)14-13-17(4)12-10-11-16(2)3/h11,13,18,20,29,31H,9-10,12,14-15H2,1-8H3/b17-13+/t18-,20+,27-/m1/s1

InChI Key

PYZGOGXMYGHHEK-NMWAPBGFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Bicyclic monoterpenoids

Alternative Parents

Substituents

Bicyclic monoterpenoid
Benzofuran
Tertiary alcohol
Tetrahydrofuran
Vinylogous acid
Ketone
Enol
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Alcohol
Carbonyl group
Organic oxide
Organooxygen compound
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.31	ChemAxon
pKa (Strongest Acidic)	4.43	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	132.07 m³·mol⁻¹	ChemAxon
Polarizability	50.23 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163188362

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one (NP0261468)

MOL for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

3D MOL for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

3D SDF for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

3D-SDF for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

PDB for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

3D PDB for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

SMILES for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

INCHI for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

Structure for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)

3D Structure for NP0261468 ((2s,3as)-3a-[(2e)-3,7-dimethylocta-2,6-dien-1-yl]-6-hydroxy-2-(2-hydroxypropan-2-yl)-7-methyl-5-[(2r)-2-methylbutanoyl]-2,3-dihydro-1-benzofuran-4-one)