NP-MRD: Showing NP-Card for 3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol (NP0261320)

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Record Information

Version

2.0

Created at

2022-09-08 03:44:08 UTC

Updated at

2022-09-08 03:44:08 UTC

NP-MRD ID

NP0261320

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol

Description

3,4-Dibromo-5-{[(2R)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol belongs to the class of organic compounds known as benzylethers. These are aromatic ethers with the general formula ROCR' (R = alkyl, aryl; R'=benzene). 3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol is found in Rhodomela confervoides. Based on a literature review very few articles have been published on 3,4-dibromo-5-{[(2R)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 29  0  0  0  0  0  0  0  0999 V2000
   -3.5527    1.7747    0.0354 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9694    0.5345    0.6085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8446   -0.4491    0.4586 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1463   -1.6889    0.9707 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2596   -0.5235   -0.9036 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9561   -1.1177   -0.9304 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1801   -0.2636   -0.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2741   -0.2605   -0.2279 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0704   -0.2678    0.8861 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4448    0.0076    0.8380 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2363    0.0320    1.9559 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0235    0.2807   -0.3773 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3925    0.5762   -0.5008 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2369    0.2758   -1.5048 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0327    0.6157   -3.2114 Br  0  0  0  0  0  0  0  0  0  0  0  0
    1.9022    0.0215   -1.4584 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7627   -0.0287   -2.9935 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -4.3561    2.3851    0.0775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9388    0.2236    0.2474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0890    0.8297    1.6980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0620   -0.0002    1.1971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4565   -2.3218    0.2452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1791    0.5100   -1.2942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9007   -1.1049   -1.5561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5238    0.7652   -0.0698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3360   -0.7763    0.9083 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6632   -0.5008    1.8450 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7858   -0.0931    2.8650 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9257    0.5648    0.3633 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 10 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 16  8  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  1
  4 22  1  0
  5 23  1  0
  5 24  1  0
  7 25  1  0
  7 26  1  0
  9 27  1  0
 11 28  1  0
 13 29  1  0
M  END


  Mrv1652309082205442D          

 17 17  0  0  1  0            999 V2000
    1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -6.1875    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
  8 16  1  0  0  0  0
 16 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0261320

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@@H](O)COCC1=CC(O)=C(O)C(Br)=C1Br

> <INCHI_IDENTIFIER>
InChI=1S/C10H12Br2O5/c11-8-5(3-17-4-6(14)2-13)1-7(15)10(16)9(8)12/h1,6,13-16H,2-4H2/t6-/m1/s1

> <INCHI_KEY>
DXNGZWOJMCXYSX-ZCFIWIBFSA-N

> <FORMULA>
C10H12Br2O5

> <MOLECULAR_WEIGHT>
372.009

> <EXACT_MASS>
369.905149

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
28.26474676812282

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,4-dibromo-5-{[(2R)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol

> <JCHEM_LOGP>
1.4589602056666664

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.263647072962192

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.519991116951126

> <JCHEM_PKA_STRONGEST_BASIC>
-2.968202714811663

> <JCHEM_POLAR_SURFACE_AREA>
90.15

> <JCHEM_REFRACTIVITY>
69.08730000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3,4-dibromo-5-{[(2R)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  O   UNK     0       2.667  -7.700   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.335  -9.240   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       8.002  -7.700   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.003  -6.930   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      14.670  -6.930   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      14.670 -10.010   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   15 Br   UNK     0      12.003 -11.550   0.000  0.00  0.00          Br+0
HETATM   16  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   17 Br   UNK     0       9.336 -10.010   0.000  0.00  0.00          Br+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   16                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    8   17                                                  
CONECT   17   16                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₀H₁₂Br₂O₅

Average Mass

372.0090 Da

Monoisotopic Mass

369.90515 Da

IUPAC Name

3,4-dibromo-5-{[(2R)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol

Traditional Name

3,4-dibromo-5-{[(2R)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol

CAS Registry Number

Not Available

SMILES

OC[C@@H](O)COCC1=CC(O)=C(O)C(Br)=C1Br

InChI Identifier

InChI=1S/C10H12Br2O5/c11-8-5(3-17-4-6(14)2-13)1-7(15)10(16)9(8)12/h1,6,13-16H,2-4H2/t6-/m1/s1

InChI Key

DXNGZWOJMCXYSX-ZCFIWIBFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rhodomela confervoides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzylethers. These are aromatic ethers with the general formula ROCR' (R = alkyl, aryl; R'=benzene).

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzylethers

Direct Parent

Benzylethers

Alternative Parents

Substituents

Benzylether
Catechol
4-halophenol
3-halophenol
2-halophenol
3-bromophenol
2-bromophenol
4-bromophenol
Glycerolipid
Glycerol ether
Phenol
Halobenzene
1-hydroxy-2-unsubstituted benzenoid
Bromobenzene
Aryl bromide
Aryl halide
1,2-diol
Secondary alcohol
Ether
Dialkyl ether
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Organohalogen compound
Organobromide
Organooxygen compound
Primary alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.46	ChemAxon
pKa (Strongest Acidic)	7.52	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	90.15 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	69.09 m³·mol⁻¹	ChemAxon
Polarizability	28.26 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163076077

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol (NP0261320)

MOL for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

3D MOL for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

3D SDF for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

3D-SDF for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

PDB for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

3D PDB for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

SMILES for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

INCHI for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

Structure for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)

3D Structure for NP0261320 (3,4-dibromo-5-{[(2r)-2,3-dihydroxypropoxy]methyl}benzene-1,2-diol)