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Record Information
Version2.0
Created at2022-09-08 02:33:19 UTC
Updated at2022-09-08 02:33:19 UTC
NP-MRD IDNP0260397
Secondary Accession NumbersNone
Natural Product Identification
Common Name(12s)-12-ethyl-9-hydroxy-8,16-diazatetracyclo[10.6.1.0²,⁷.0¹⁶,¹⁹]nonadeca-1(19),2,4,6,8,17-hexaen-15-one
DescriptionRhazinicine belongs to the class of organic compounds known as benzenoids. These are aromatic compounds containing one or more benzene rings. (12s)-12-ethyl-9-hydroxy-8,16-diazatetracyclo[10.6.1.0²,⁷.0¹⁶,¹⁹]nonadeca-1(19),2,4,6,8,17-hexaen-15-one is found in Kopsia singapurensis. (12s)-12-ethyl-9-hydroxy-8,16-diazatetracyclo[10.6.1.0²,⁷.0¹⁶,¹⁹]nonadeca-1(19),2,4,6,8,17-hexaen-15-one was first documented in 2007 (PMID: 17939738). Based on a literature review a small amount of articles have been published on rhazinicine (PMID: 23647487) (PMID: 26125941) (PMID: 23744784) (PMID: 18338359).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC19H20N2O2
Average Mass308.3810 Da
Monoisotopic Mass308.15248 Da
IUPAC Name(12S)-12-ethyl-9-hydroxy-8,16-diazatetracyclo[10.6.1.0^{2,7}.0^{16,19}]nonadeca-1(19),2,4,6,8,17-hexaen-15-one
Traditional Name(12S)-12-ethyl-9-hydroxy-8,16-diazatetracyclo[10.6.1.0^{2,7}.0^{16,19}]nonadeca-1(19),2,4,6,8,17-hexaen-15-one
CAS Registry NumberNot Available
SMILES
CC[C@]12CCC(=O)N3C=CC(=C13)C1=CC=CC=C1N=C(O)CC2
InChI Identifier
InChI=1S/C19H20N2O2/c1-2-19-10-7-16(22)20-15-6-4-3-5-13(15)14-9-12-21(18(14)19)17(23)8-11-19/h3-6,9,12H,2,7-8,10-11H2,1H3,(H,20,22)/t19-/m0/s1
InChI KeyTXWKUWXSHGUINF-IBGZPJMESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Kopsia singapurensisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzenoids. These are aromatic compounds containing one or more benzene rings.
KingdomOrganic compounds
Super ClassBenzenoids
ClassNot Available
Sub ClassNot Available
Direct ParentBenzenoids
Alternative Parents
Substituents
  • Benzenoid
  • Pyrrole
  • Heteroaromatic compound
  • Carboxamide group
  • Lactam
  • Secondary carboxylic acid amide
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.48ChemAxon
pKa (Strongest Acidic)5.64ChemAxon
pKa (Strongest Basic)0.92ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area54.59 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity90.43 m³·mol⁻¹ChemAxon
Polarizability33.42 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID555342
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound639955
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Gan CY, Low YY, Thomas NF, Kam TS: Rhazinilam-Leuconolam-Leuconoxine Alkaloids from Leuconotis griffithii. J Nat Prod. 2013 May 24;76(5):957-64. doi: 10.1021/np400214y. Epub 2013 May 6. [PubMed:23647487 ]
  2. Lim JL, Sim KS, Yong KT, Loong BJ, Ting KN, Lim SH, Low YY, Kam TS: Biologically active vallesamine, strychnan, and rhazinilam alkaloids from Alstonia: Pneumatophorine, a nor-secovallesamine with unusual incorporation of a 3-ethylpyridine moiety. Phytochemistry. 2015 Sep;117:317-324. doi: 10.1016/j.phytochem.2015.06.024. Epub 2015 Jun 27. [PubMed:26125941 ]
  3. Sugimoto K, Toyoshima K, Nonaka S, Kotaki K, Ueda H, Tokuyama H: Protecting-group-free total synthesis of (-)-rhazinilam and (-)-rhazinicine using a gold-catalyzed cascade cyclization. Angew Chem Int Ed Engl. 2013 Jul 8;52(28):7168-71. doi: 10.1002/anie.201303067. Epub 2013 Jun 6. [PubMed:23744784 ]
  4. Beck EM, Hatley R, Gaunt MJ: Synthesis of rhazinicine by a metal-catalyzed C-H bond functionalization strategy. Angew Chem Int Ed Engl. 2008;47(16):3004-7. doi: 10.1002/anie.200705005. [PubMed:18338359 ]
  5. Subramaniam G, Hiraku O, Hayashi M, Koyano T, Komiyama K, Kam TS: Biologically active aspidofractinine, rhazinilam, akuammiline, and vincorine alkaloids from Kopsia. J Nat Prod. 2007 Nov;70(11):1783-9. doi: 10.1021/np0703747. Epub 2007 Oct 17. [PubMed:17939738 ]
  6. LOTUS database [Link]